Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A1D33_RS11905 Genome accession   NZ_CP015443
Coordinates   2558125..2558814 (+) Length   229 a.a.
NCBI ID   WP_199776864.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2553125..2563814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS11880 (A1D33_011880) degS 2553409..2554572 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  A1D33_RS11885 (A1D33_011885) degU 2554649..2555338 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A1D33_RS11890 (A1D33_011890) - 2555436..2556284 (+) 849 WP_015418336.1 DegV family protein -
  A1D33_RS11895 (A1D33_011895) comFA 2556392..2557777 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  A1D33_RS11900 (A1D33_011900) - 2557835..2558119 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  A1D33_RS11905 (A1D33_011905) comFC 2558125..2558814 (+) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  A1D33_RS11910 (A1D33_011910) - 2558888..2559307 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  A1D33_RS11915 (A1D33_011915) flgM 2559377..2559643 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A1D33_RS11920 (A1D33_011920) - 2559658..2560140 (+) 483 WP_003151394.1 flagellar protein FlgN -
  A1D33_RS11925 (A1D33_011925) flgK 2560156..2561673 (+) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  A1D33_RS11930 (A1D33_011930) flgL 2561685..2562602 (+) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  A1D33_RS11935 (A1D33_011935) - 2562693..2563262 (+) 570 WP_040238821.1 DUF6470 family protein -
  A1D33_RS11940 (A1D33_011940) fliW 2563292..2563723 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25235.79 Da        Isoelectric Point: 8.0779

>NTDB_id=179859 A1D33_RS11905 WP_199776864.1 2558125..2558814(+) (comFC) [Bacillus velezensis strain CC09]
MNCLLCDSSISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=179859 A1D33_RS11905 WP_199776864.1 2558125..2558814(+) (comFC) [Bacillus velezensis strain CC09]
CTGAATTGTTTATTGTGTGACTCATCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment