Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   A1D33_RS11885 Genome accession   NZ_CP015443
Coordinates   2554649..2555338 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CC09     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2549649..2560338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS11865 (A1D33_011865) - 2550154..2551230 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  A1D33_RS11870 (A1D33_011870) - 2551320..2552534 (-) 1215 WP_015418337.1 LCP family protein -
  A1D33_RS11875 (A1D33_011875) - 2552539..2553186 (-) 648 WP_003151384.1 YigZ family protein -
  A1D33_RS11880 (A1D33_011880) degS 2553409..2554572 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  A1D33_RS11885 (A1D33_011885) degU 2554649..2555338 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A1D33_RS11890 (A1D33_011890) - 2555436..2556284 (+) 849 WP_015418336.1 DegV family protein -
  A1D33_RS11895 (A1D33_011895) comFA 2556392..2557777 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  A1D33_RS11900 (A1D33_011900) - 2557835..2558119 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  A1D33_RS11905 (A1D33_011905) comFC 2558125..2558814 (+) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  A1D33_RS11910 (A1D33_011910) - 2558888..2559307 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  A1D33_RS11915 (A1D33_011915) flgM 2559377..2559643 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A1D33_RS11920 (A1D33_011920) - 2559658..2560140 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=179857 A1D33_RS11885 WP_003219701.1 2554649..2555338(+) (degU) [Bacillus velezensis strain CC09]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=179857 A1D33_RS11885 WP_003219701.1 2554649..2555338(+) (degU) [Bacillus velezensis strain CC09]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment