Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   A1D33_RS10935 Genome accession   NZ_CP015443
Coordinates   2366545..2366664 (-) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361545..2371664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS10890 (A1D33_010890) speE 2361946..2362776 (+) 831 WP_003151052.1 spermidine synthase -
  A1D33_RS10895 (A1D33_010895) speB 2362835..2363707 (+) 873 WP_040238749.1 agmatinase -
  A1D33_RS10900 (A1D33_010900) - 2363875..2364093 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  A1D33_RS10910 (A1D33_010910) - 2364684..2365196 (-) 513 WP_031304384.1 stage II sporulation protein M -
  A1D33_RS10915 (A1D33_010915) - 2365240..2365521 (-) 282 WP_007407643.1 hypothetical protein -
  A1D33_RS10920 (A1D33_010920) - 2365707..2365892 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  A1D33_RS10925 (A1D33_010925) - 2365927..2366130 (-) 204 WP_007407641.1 hypothetical protein -
  A1D33_RS10930 (A1D33_010930) - 2366144..2366347 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  A1D33_RS10935 (A1D33_010935) phrF 2366545..2366664 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  A1D33_RS10940 (A1D33_010940) rapF 2366648..2367793 (-) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  A1D33_RS10945 (A1D33_010945) - 2368024..2369379 (+) 1356 WP_033574380.1 YncE family protein -
  A1D33_RS10950 (A1D33_010950) - 2369418..2370795 (+) 1378 Protein_2168 YncE family protein -
  A1D33_RS10955 (A1D33_010955) - 2370801..2371313 (-) 513 Protein_2169 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=179851 A1D33_RS10935 WP_015240778.1 2366545..2366664(-) (phrF) [Bacillus velezensis strain CC09]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=179851 A1D33_RS10935 WP_015240778.1 2366545..2366664(-) (phrF) [Bacillus velezensis strain CC09]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment