Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   A1D33_RS07480 Genome accession   NZ_CP015443
Coordinates   1654495..1654932 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1649495..1659932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS07465 (A1D33_007470) - 1652354..1652716 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  A1D33_RS07470 (A1D33_007475) hxlA 1652948..1653583 (+) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  A1D33_RS07475 (A1D33_007480) hxlB 1653580..1654137 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  A1D33_RS07480 (A1D33_007485) nucA/comI 1654495..1654932 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  A1D33_RS07485 (A1D33_007490) nin/comJ 1654953..1655351 (+) 399 WP_039252825.1 competence protein ComJ Regulator
  A1D33_RS07490 (A1D33_007495) - 1655392..1656828 (-) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  A1D33_RS07495 (A1D33_007500) - 1656932..1657210 (-) 279 WP_263612330.1 YckD family protein -
  A1D33_RS07500 (A1D33_007505) - 1657327..1657761 (-) 435 WP_012116767.1 RDD family protein -
  A1D33_RS07505 (A1D33_007510) - 1657776..1658912 (-) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=179840 A1D33_RS07480 WP_003156588.1 1654495..1654932(+) (nucA/comI) [Bacillus velezensis strain CC09]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=179840 A1D33_RS07480 WP_003156588.1 1654495..1654932(+) (nucA/comI) [Bacillus velezensis strain CC09]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment