Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GFC30_RS12620 Genome accession   NZ_CP015438
Coordinates   2472646..2474367 (-) Length   573 a.a.
NCBI ID   WP_066326129.1    Uniprot ID   A0A167T8K8
Organism   Anoxybacteroides amylolyticum strain DSM 15939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2467646..2479367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC30_RS12600 (GFC30_2573) - 2469001..2469237 (+) 237 WP_066326116.1 DUF2627 domain-containing protein -
  GFC30_RS12605 (GFC30_2574) - 2469251..2469973 (-) 723 WP_066326118.1 glycerophosphodiester phosphodiesterase -
  GFC30_RS16645 (GFC30_2575) - 2470061..2470207 (+) 147 WP_084256345.1 YycC family protein -
  GFC30_RS12610 (GFC30_2576) spo0A 2470230..2471009 (-) 780 WP_066326121.1 sporulation transcription factor Spo0A -
  GFC30_RS12615 (GFC30_2577) spoIVB 2471242..2472528 (-) 1287 WP_066326128.1 SpoIVB peptidase -
  GFC30_RS12620 (GFC30_2578) recN 2472646..2474367 (-) 1722 WP_066326129.1 DNA repair protein RecN Machinery gene
  GFC30_RS12625 (GFC30_2579) ahrC 2474381..2474830 (-) 450 WP_066327392.1 transcriptional regulator AhrC/ArgR -
  GFC30_RS12630 (GFC30_2580) - 2474878..2475711 (-) 834 WP_066326130.1 TlyA family RNA methyltransferase -
  GFC30_RS12635 (GFC30_2581) dxs 2475715..2477607 (-) 1893 WP_066326132.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GFC30_RS12640 (GFC30_2582) - 2477813..2478691 (-) 879 WP_066326137.1 polyprenyl synthetase family protein -
  GFC30_RS12645 (GFC30_2583) - 2478693..2478923 (-) 231 WP_066326138.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64401.68 Da        Isoelectric Point: 5.0404

>NTDB_id=179782 GFC30_RS12620 WP_066326129.1 2472646..2474367(-) (recN) [Anoxybacteroides amylolyticum strain DSM 15939]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEERAEIEGLFLLSDDTHPCYEK
CAEVGIDISEGMVVLRREISTSGKSVCRVNGKLVTMAVLRDIGSTLVDIHGQHEHQELMDPNKHLPLLDEYGGKEISAAL
EEYRAVYEKYEQLKKQLHKLSENEQQIAHRLDLLTFQLDEIQKANLQLNEDEQLMEEKVKIVNFQKIYDALKNGYDALYG
EQRALDWVGLAMSHLDDVAHIDPVLKEAYETIANSYYLLEETAYKLRDELEQLEYDPSRLDVIEGRLNEISHLKRKYGQT
VAEILQYAEKITEEIDSIQNRDTRIHQLQKELQSVTEDLVVEAKNVTNVRMKHAKTLIQHIHQELKDLYMEKTTFDMVFT
KREGTLDAPIIDGVPVKFQADGVDVAEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSVGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTSVKVLTKEEKIKEIGRMISGVEITELTKEH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=179782 GFC30_RS12620 WP_066326129.1 2472646..2474367(-) (recN) [Anoxybacteroides amylolyticum strain DSM 15939]
ATGCTTGCGGAATTGTCCATTAAAAATTTTGCGATTATTGAGTCGTTATCGATTTCGTTTGAAAAAGGACTCACCGTGTT
AACGGGGGAAACAGGTGCGGGAAAATCGATTATTATTGACGCGATTCATTTATTGATTGGTGGACGAGGTTCGGCCGAGT
TTGTCCGTTATGGCGAAGAGCGGGCAGAAATTGAAGGGCTATTTTTATTAAGCGACGACACGCACCCGTGCTACGAAAAA
TGCGCGGAGGTAGGGATTGATATTAGCGAAGGGATGGTCGTATTGCGCCGGGAGATTTCGACGAGCGGAAAAAGCGTTTG
CCGAGTAAATGGAAAACTCGTGACGATGGCTGTCTTACGCGACATCGGCTCAACACTTGTCGATATTCACGGACAGCATG
AACACCAAGAACTGATGGATCCGAATAAACATTTGCCCCTACTAGACGAATACGGCGGAAAAGAAATTAGCGCCGCTTTA
GAAGAATATCGCGCTGTCTACGAAAAATATGAACAGCTGAAAAAACAGCTGCACAAACTAAGCGAAAATGAACAACAAAT
TGCTCATCGGCTCGACTTATTAACGTTCCAGCTCGACGAAATTCAAAAAGCAAATTTGCAGCTGAACGAAGACGAACAAC
TGATGGAAGAGAAAGTAAAAATTGTGAACTTTCAAAAAATTTACGATGCACTAAAAAACGGATACGATGCATTGTACGGC
GAACAGCGCGCGCTCGATTGGGTTGGACTAGCGATGAGTCACTTAGACGATGTTGCCCATATTGATCCAGTGTTAAAAGA
AGCGTATGAAACGATTGCTAATAGCTATTATTTGCTAGAGGAGACGGCATATAAGCTGCGTGACGAGCTAGAACAGCTAG
AATACGACCCGAGCCGACTGGATGTAATCGAAGGAAGATTGAACGAAATTAGCCACTTAAAGCGAAAATACGGACAGACA
GTTGCTGAAATTTTACAATATGCCGAAAAAATTACCGAAGAAATCGATTCGATTCAAAACCGCGACACCCGAATTCATCA
GCTACAAAAAGAGCTGCAATCGGTGACAGAAGATTTAGTCGTCGAAGCGAAAAACGTCACAAACGTGCGCATGAAGCATG
CGAAAACGCTCATTCAGCATATTCACCAAGAACTAAAAGATTTATACATGGAAAAAACGACGTTTGATATGGTATTTACG
AAGCGCGAAGGAACGCTGGATGCGCCAATTATTGACGGAGTGCCAGTAAAATTTCAAGCGGATGGCGTCGATGTCGCGGA
ATTTTACATTTCAACAAACGTCGGTGAACCGCTAAAACCGCTCGCGAAAATTGCTTCTGGCGGAGAATTGTCGCGCATTA
TGCTCGCATTAAAAAGCATTTTTTCTAAGCACCAAGGCGTGACGTCGATTATTTTCGATGAAGTCGATACCGGTGTAAGT
GGTCGTGTGGCCCAAGCCATTGCCGAAAAAATTTACCGCGTTTCTGTCGGTTCGCAAGTGTTGTGCATTTCCCATTTGCC
GCAAGTAGCAGCGATGGCAGATACACACTTATTCATCGCGAAAGAAACGGACGGAACCCGGACGAAAACGTCGGTAAAAG
TGTTGACAAAAGAAGAAAAAATTAAAGAAATTGGCCGGATGATTTCCGGTGTCGAAATTACGGAGTTAACGAAAGAGCAT
GCAAAAGAGCTGTTGGAATTAGCAGCCAAAATAAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A167T8K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.415

100

0.635

Multiple sequence alignment