Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FORC53_RS01545 Genome accession   NZ_CP019290
Coordinates   306675..308879 (-) Length   734 a.a.
NCBI ID   WP_045620693.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_053     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301675..313879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS01525 (FORC53_0272) hslU 302708..304039 (-) 1332 WP_058645415.1 HslU--HslV peptidase ATPase subunit -
  FORC53_RS01530 (FORC53_0273) hslV 304067..304621 (-) 555 WP_011079332.1 ATP-dependent protease subunit HslV -
  FORC53_RS01535 (FORC53_0274) - 304772..305329 (-) 558 WP_011151294.1 SPOR domain-containing protein -
  FORC53_RS01540 (FORC53_0275) cytR 305439..306446 (-) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  FORC53_RS01545 (FORC53_0276) priA 306675..308879 (-) 2205 WP_045620693.1 primosomal protein N' Machinery gene
  FORC53_RS01550 (FORC53_0277) rpmE 309160..309381 (+) 222 WP_011079336.1 50S ribosomal protein L31 -
  FORC53_RS01555 (FORC53_0278) - 309659..310936 (+) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  FORC53_RS01560 (FORC53_0279) metJ 311023..311340 (-) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  FORC53_RS01565 (FORC53_0280) - 311552..312718 (+) 1167 WP_060530650.1 O-succinylhomoserine (thiol)-lyase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82034.61 Da        Isoelectric Point: 8.5763

>NTDB_id=179722 FORC53_RS01545 WP_045620693.1 306675..308879(-) (priA) [Vibrio vulnificus strain FORC_053]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPIKAVLDHRPIWPDSVYS
LLLWCSQFYQYPLGETLHNALPAALRKGKAADFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQTFLDE
EVASTTLRTLEEKGWISCEEKTPQLTRWGNPIEHPVDKPKLNQEQAIAIATVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGVAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRRHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTTLFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHTCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=179722 FORC53_RS01545 WP_045620693.1 306675..308879(-) (priA) [Vibrio vulnificus strain FORC_053]
ATGCGTCCATCCATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGCCGCGTGAGTGTGCCATTTGGACGACAAACCTTGATTGGCATTGTCACCGCTTTGGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCATTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCAGTTTTACCAATATCCCTTAGGTGAAACACTGCATAACGCCCTCCCCGCTGCACTAAGAAA
AGGCAAAGCGGCTGACTTTGCCACTCTACAAGAATGGCAACTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGTTAA
ACAGTCGCGCGATAAAGCAAGCGAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAAACCTTTTTGGATGAG
GAAGTGGCATCCACAACCTTACGCACCTTAGAAGAAAAAGGCTGGATCAGCTGTGAAGAAAAAACGCCACAGTTAACTCG
TTGGGGTAACCCGATTGAACATCCCGTCGATAAGCCAAAACTCAACCAAGAGCAAGCCATTGCCATTGCGACCGTTAACA
GCCAGACAGACTTTGGCTGTTATCTGTTGGAAGGGGTCACAGGTTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGCAAACAGGCTCTGGTGTTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGGTTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACTGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGATAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCCCAGCTAGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCGTACAAACAGCAAGATAGCTTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTCGGTTCAGCCACGCCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTAACCCAACGAGCAGGAGTGGCCGTGCCAACCACCAACAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGCGGCCTATCAGCGCCACTCATTGCTGAAATGCGTCGTCATTTAAAAGCGGGCAATCAGGTGATGCTGTTTCTCAA
CCGTCGAGGCTTCTCCCCTGCGTTAATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGTTCTCAACAACCTATTATCCATCAATGCCAAGGTTGT
GGCTCGACACAACTGGTGACGGTTGGTGTCGGTACTGAGCAACTGGAAAACCAGTTAACGACCCTCTTTCCCGACTACAA
AGCGATTCGCATCGACCGCGATAGCACACGACGTAAAGGCAGCCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTGGCTAAAGGGCATCATTTCCCAGACGTGACGTTAGTGGCACTGTTGGATGTG
GATGGGTCACTGTACAGCAGTGACTTCCGAGCGTCCGAGCGATTGGCTCAGTTGTTTATTCAAGTGGCCGGACGAGCAGG
GCGTGCTAGCAAACCTGGCGAAGTGATATTACAAACCCACCATCCAGAACACACCTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCATTTTGCGCAGTCTGCACTGGAAGAGCGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGCGAAATCGTCGAAACATTCTTACGTCAAGTGCGTATGACTCTCGAGTCGCATCCCTTGTT
TGATCACACTTGTCTCGTGCTCGGTCCAACCCCCGCTCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCGAAA
AAAGTACGTTGGAATTTGGATATTGAGCCACAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)

DEAD/DEAH box helicase (DEAD)

(205-364)

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)

Helicase conserved C-terminal domain (Helicase_C)

(506-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.478

100

0.436