Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GFC29_RS09025 Genome accession   NZ_CP015436
Coordinates   1869786..1872143 (-) Length   785 a.a.
NCBI ID   WP_044744706.1    Uniprot ID   A0A160F8G8
Organism   Anoxybacillus sp. B7M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864786..1877143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC29_RS09010 (GFC29_1855) dtd 1866459..1866911 (-) 453 WP_044744648.1 D-aminoacyl-tRNA deacylase -
  GFC29_RS09015 (GFC29_1856) - 1866926..1869124 (-) 2199 WP_044744649.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GFC29_RS09020 (GFC29_1857) - 1869274..1869786 (-) 513 WP_044744650.1 adenine phosphoribosyltransferase -
  GFC29_RS09025 (GFC29_1858) recJ 1869786..1872143 (-) 2358 WP_044744706.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GFC29_RS09030 (GFC29_1859) - 1872370..1873266 (-) 897 WP_044744651.1 cation diffusion facilitator family transporter -
  GFC29_RS09035 (GFC29_1860) secDF 1873374..1875626 (-) 2253 WP_044744652.1 protein translocase subunit SecDF -
  GFC29_RS09040 (GFC29_1861) - 1875733..1876035 (-) 303 WP_052660996.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87986.28 Da        Isoelectric Point: 5.4780

>NTDB_id=179721 GFC29_RS09025 WP_044744706.1 1869786..1872143(-) (recJ) [Anoxybacillus sp. B7M1]
MLTAKTRWDVKRPDKNKVDQLMKELDIAPLVASLLVNRGIDTARAAAAFLYPEKQPFHDPFLLDDMHRAIERIQQAVRNE
EHILVFGDYDADGVSSTTVMMSALSQIGAKADFYIPNRFTEGYGPNKNAFCLAKEKGVSLIITVDNGIAAVEEVALANEL
GMDVIITDHHEPGPTLPEALAIIHPKKPGSTYPFRDLAGVGVAFKLAHALLGEVPEHLLDIVAIGTIADLVPLTGENRLL
AAKGIEQLRDTKRIGLRALLKQCGTNLSQVNEETVGFAIAPRINAVGRLGDAAPAVRLLMTEDEAEAHELAKKTEMLNRE
RQKLVNEMTEEAVAIIQEQFPPEKQHVLVVAKEGWNVGVIGIVASRLVEQFYRPTIVLSIDPEKGIAKGSARSIQGFDLF
AHLSKCRDILPHFGGHPMAAGMTLSLEDVDELRERLNAFAKEALTEEDFIPITSIDAACSIDDITLGALEQIEKLSPFGT
ENPRPLILIEDASVQSMRRIGADQSHIKIVFEQDGATLECVGFGYGYLHDEIAPNAKVSIVGSLSVNEWNHLRKPQLMIC
DAAVREWQLFDIRGIQHVHSLFSLLPADRRRFIAFGQETIEALRLQSYREEIDVIEAIEEAKRLSLDGSYVVLLDLPPTL
EMIKVLLSYSLPARIYALFYQRETHFFSTLPTRDHFKWFYAFLMKRGTFHLEKYGDELARSRGWTKETIRFMVQVFLELQ
FVTVDNGIVSLVPNPKKRDLAESPTYRLKQAQLELENMLLYSSYEQLKRTFSEIKALRTYEEAKM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=179721 GFC29_RS09025 WP_044744706.1 1869786..1872143(-) (recJ) [Anoxybacillus sp. B7M1]
ATGTTAACGGCAAAAACTCGATGGGATGTGAAGCGTCCCGATAAAAATAAAGTGGATCAGTTAATGAAGGAGCTGGATAT
TGCTCCACTTGTGGCTTCGCTGCTTGTGAACCGTGGAATTGATACTGCACGAGCGGCAGCCGCCTTTTTATATCCAGAAA
AACAACCGTTTCACGATCCTTTTTTGCTAGATGATATGCATCGAGCTATAGAAAGGATTCAGCAGGCGGTGCGAAATGAG
GAGCATATTCTTGTATTCGGAGATTATGATGCTGACGGTGTAAGCAGCACAACCGTCATGATGAGCGCATTGTCTCAAAT
AGGCGCGAAAGCGGATTTTTACATACCCAATCGCTTTACTGAAGGATATGGACCAAATAAAAATGCTTTTTGTCTTGCCA
AAGAAAAAGGCGTGTCTTTAATCATCACAGTGGACAATGGAATTGCTGCAGTCGAAGAAGTGGCGCTGGCAAATGAGCTA
GGCATGGACGTTATTATTACCGATCATCATGAGCCGGGACCTACACTTCCTGAAGCATTGGCGATTATTCACCCGAAAAA
GCCGGGCAGCACATACCCGTTTCGTGATTTAGCTGGGGTAGGCGTGGCTTTTAAGCTGGCGCATGCATTGCTTGGAGAAG
TGCCAGAACATTTGCTTGATATCGTGGCGATTGGAACCATTGCTGACCTCGTGCCGCTTACAGGTGAAAATCGTCTGCTT
GCCGCAAAAGGAATCGAGCAATTGCGAGATACAAAGCGCATCGGGTTGCGTGCTCTATTGAAGCAATGCGGTACCAACTT
GAGCCAAGTGAATGAGGAAACAGTCGGGTTTGCCATCGCTCCGCGAATTAATGCGGTCGGAAGACTTGGAGACGCCGCCC
CTGCTGTTCGGCTGCTCATGACGGAGGATGAAGCAGAAGCGCACGAACTAGCGAAAAAAACGGAGATGCTGAATCGGGAG
CGGCAAAAGCTAGTAAATGAAATGACGGAAGAAGCCGTTGCGATCATACAGGAGCAATTTCCTCCTGAGAAACAGCATGT
GCTTGTTGTAGCAAAAGAAGGCTGGAATGTTGGAGTTATCGGGATCGTAGCCTCTCGGCTTGTCGAACAATTTTACCGGC
CGACCATTGTTCTAAGTATCGATCCGGAAAAAGGGATTGCGAAAGGATCGGCGCGCAGCATTCAAGGATTTGATCTATTT
GCCCATTTGTCAAAATGCCGCGATATTTTGCCCCATTTTGGCGGACATCCGATGGCGGCTGGAATGACCCTTTCACTTGA
AGATGTCGATGAATTGCGGGAACGCCTTAATGCGTTTGCGAAGGAAGCATTGACCGAGGAAGATTTTATCCCGATCACTT
CCATTGATGCCGCCTGCTCGATTGATGACATTACCTTAGGGGCATTAGAACAAATCGAAAAACTCTCCCCATTTGGGACA
GAGAACCCGCGCCCTCTTATTTTAATTGAAGACGCATCCGTGCAAAGCATGCGGCGTATCGGCGCTGACCAATCACATAT
AAAAATCGTGTTTGAACAGGATGGGGCAACACTGGAATGTGTCGGATTTGGCTATGGATATTTGCATGATGAAATTGCTC
CTAATGCAAAGGTTTCCATTGTTGGATCATTATCGGTAAATGAATGGAACCATCTTCGCAAACCGCAGCTGATGATTTGT
GATGCCGCTGTGCGAGAATGGCAGCTGTTTGATATAAGAGGAATCCAGCATGTGCACTCTCTTTTTTCGCTGCTTCCCGC
TGATCGGCGCCGGTTTATCGCATTTGGTCAAGAGACAATAGAAGCGCTTCGTCTGCAGTCTTATCGTGAAGAAATAGATG
TCATTGAAGCGATAGAGGAAGCGAAGCGTCTTTCTTTGGATGGGAGCTATGTCGTTTTGCTTGACCTGCCGCCAACTTTA
GAAATGATAAAAGTTTTATTAAGTTATAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CAGCACGTTGCCGACGCGCGACCATTTTAAGTGGTTTTATGCGTTTTTGATGAAGCGAGGTACATTCCATCTCGAAAAAT
ACGGCGATGAGCTGGCGCGCTCGCGCGGTTGGACGAAGGAAACGATTCGTTTTATGGTGCAAGTATTTTTAGAATTGCAG
TTTGTAACGGTGGACAATGGGATCGTTTCGCTTGTTCCAAATCCCAAAAAGCGCGATTTAGCCGAATCTCCTACGTATCG
TTTAAAACAGGCTCAGCTTGAGCTGGAAAATATGCTTTTATATTCATCGTATGAACAACTTAAGCGCACCTTTTCCGAAA
TAAAAGCGTTGCGGACATATGAGGAGGCAAAAATGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(317-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F8G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.943

98.599

0.552

Multiple sequence alignment