Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GFC28_RS18430 Genome accession   NZ_CP015435
Coordinates   3791960..3793681 (+) Length   573 a.a.
NCBI ID   WP_044744468.1    Uniprot ID   A0A160FCP9
Organism   Anoxybacillus sp. B2M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3786960..3798681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC28_RS18405 (GFC28_3780) - 3787362..3787592 (+) 231 WP_044744471.1 exodeoxyribonuclease VII small subunit -
  GFC28_RS18410 (GFC28_3781) - 3787599..3788474 (+) 876 WP_044744685.1 polyprenyl synthetase family protein -
  GFC28_RS18415 (GFC28_3782) dxs 3788699..3790591 (+) 1893 WP_044744470.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GFC28_RS18420 (GFC28_3783) - 3790595..3791437 (+) 843 WP_044744469.1 TlyA family RNA methyltransferase -
  GFC28_RS18425 (GFC28_3784) argR 3791493..3791942 (+) 450 WP_044744684.1 transcriptional regulator ArgR -
  GFC28_RS18430 (GFC28_3785) recN 3791960..3793681 (+) 1722 WP_044744468.1 DNA repair protein RecN Machinery gene
  GFC28_RS18435 (GFC28_3786) spoIVB 3793807..3795093 (+) 1287 WP_044744467.1 SpoIVB peptidase -
  GFC28_RS18440 (GFC28_3787) spo0A 3795361..3796140 (+) 780 WP_044744466.1 sporulation transcription factor Spo0A -
  GFC28_RS18445 (GFC28_3788) - 3796509..3796949 (+) 441 WP_044744465.1 RrF2 family transcriptional regulator -
  GFC28_RS18450 (GFC28_3789) - 3797023..3797925 (+) 903 WP_044744464.1 NAD(P)/FAD-dependent oxidoreductase -
  GFC28_RS19080 (GFC28_3790) - 3798214..3798363 (-) 150 WP_082063733.1 YycC family protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64529.76 Da        Isoelectric Point: 4.9025

>NTDB_id=179703 GFC28_RS18430 WP_044744468.1 3791960..3793681(+) (recN) [Anoxybacillus sp. B2M1]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEEKAEIEGLFLLEEETHPCYQK
CAEVGIDISEGMVILRREISVSGKSVCRVNGKLVTMGILREIGSTLVDIHGQHEHQELMDSSRHLPLLDEYGGAEIASAL
EEYQAVYRKYEQLKKQLQKLNENEQQMAHRLDLLTFQLDEIQKAGLQPNEDEQLMEEKVKIVNFQKIYEALKNSYEALYG
EQRGLDWIGLTMSHLDDVAHIDAGLREMHETIANSYYLLEEMAYKLRDQLEQLEYDPNRLDFIEGRLNEINHLKRKYGQT
VADILQYAEKIAQELDTIQNRDTHIHQLQKELQSVTEDLLIEAKNVTAVRMKHAQTLVQHIYQELKDLYMEKTQFDIVFS
KREGLLDAPLIDGVPVKFQEDGVDVAEFYISTNVGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSVGSQVLCISHLPQVAAMADTHLLISKETDGNRTKTSVKALTEDEKIKEIGRMISGVEITELTKEH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=179703 GFC28_RS18430 WP_044744468.1 3791960..3793681(+) (recN) [Anoxybacillus sp. B2M1]
GTGCTTGCGGAATTATCAATTAAAAATTTTGCCATTATTGAGTCTCTGTCGATCTCCTTTGAGAAAGGCTTGACAGTGCT
GACAGGGGAGACAGGAGCCGGAAAGTCCATTATTATTGATGCCATCCATTTGTTGATTGGTGGGCGTGGTTCCGCTGAAT
TTGTTCGCTACGGCGAAGAGAAAGCGGAAATTGAAGGACTGTTTTTATTAGAAGAAGAAACGCATCCCTGCTATCAAAAA
TGTGCAGAAGTGGGCATTGATATTAGCGAAGGGATGGTCATTCTGCGCCGAGAGATTTCGGTAAGCGGAAAAAGCGTTTG
CCGCGTGAATGGCAAATTGGTGACGATGGGAATTTTGCGCGAAATTGGCTCTACTCTTGTCGATATCCATGGGCAGCATG
AACATCAGGAATTAATGGATTCCAGCCGGCATTTGCCGTTGCTTGATGAATATGGAGGCGCAGAAATTGCTTCGGCCCTC
GAAGAGTATCAAGCGGTGTATCGAAAATATGAACAGTTAAAAAAACAGCTGCAAAAATTGAATGAAAATGAACAGCAAAT
GGCGCACCGCCTTGATTTGCTCACATTTCAGCTTGATGAGATTCAAAAAGCCGGCTTGCAGCCAAATGAAGATGAACAAT
TAATGGAAGAAAAAGTAAAGATTGTGAACTTCCAAAAAATATATGAAGCGTTAAAGAATAGTTACGAAGCGCTATATGGA
GAACAGCGCGGGCTTGATTGGATCGGGCTTACGATGAGCCATTTAGATGACGTTGCTCACATTGATGCCGGCTTGAGAGA
AATGCATGAAACGATCGCCAACAGCTATTATTTACTCGAAGAAATGGCTTATAAATTGCGCGATCAATTAGAGCAGTTGG
AATATGATCCGAACCGCCTTGATTTTATTGAAGGACGCCTGAATGAAATTAATCATTTAAAACGAAAATATGGACAGACA
GTCGCCGATATTTTGCAATATGCAGAAAAAATTGCCCAAGAGCTTGATACGATCCAAAATCGCGATACGCATATTCATCA
GCTTCAAAAAGAACTGCAATCTGTAACAGAAGATTTACTGATTGAGGCGAAAAATGTTACCGCTGTGCGAATGAAGCATG
CCCAAACGCTGGTTCAGCACATTTATCAAGAACTCAAAGATTTGTATATGGAAAAGACGCAGTTCGATATTGTTTTTAGC
AAACGGGAGGGCTTGCTTGATGCTCCGTTAATTGATGGCGTGCCTGTCAAATTTCAAGAGGACGGTGTTGATGTCGCCGA
ATTTTATATTTCAACAAACGTTGGCGAGCCGTTAAAACCTCTCGCTAAAGTCGCTTCAGGAGGCGAACTGTCTCGCATCA
TGCTGGCCTTAAAGAGTATTTTTTCTAAGCATCAAGGCGTTACATCGATCATTTTTGATGAAGTGGATACGGGAGTGAGC
GGACGCGTGGCGCAGGCGATTGCTGAAAAAATTTATCGTGTGTCTGTCGGCTCACAGGTGCTTTGCATCTCCCACTTGCC
GCAAGTCGCAGCGATGGCGGATACGCATTTGCTCATTTCTAAGGAAACAGACGGAAATCGAACCAAAACATCGGTCAAAG
CACTTACAGAAGATGAAAAAATTAAAGAAATTGGCCGAATGATTTCTGGGGTGGAAATTACAGAGCTGACAAAGGAACAT
GCGAAAGAGCTGCTTGAATTAGCAGCAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160FCP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.24

100

0.634

Multiple sequence alignment