Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GFC28_RS18180 | Genome accession | NZ_CP015435 |
| Coordinates | 3748178..3749242 (+) | Length | 354 a.a. |
| NCBI ID | WP_044744511.1 | Uniprot ID | - |
| Organism | Anoxybacillus sp. B2M1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3743178..3754242
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC28_RS18150 (GFC28_3728) | - | 3743524..3743880 (+) | 357 | WP_044744517.1 | MTH1187 family thiamine-binding protein | - |
| GFC28_RS19070 (GFC28_3729) | - | 3743944..3744120 (-) | 177 | WP_044744516.1 | DUF2759 domain-containing protein | - |
| GFC28_RS18155 (GFC28_3730) | - | 3744183..3744605 (-) | 423 | WP_044744515.1 | hypothetical protein | - |
| GFC28_RS18160 (GFC28_3731) | - | 3744692..3745324 (+) | 633 | WP_044744691.1 | MBL fold metallo-hydrolase | - |
| GFC28_RS18165 (GFC28_3732) | - | 3745484..3746611 (+) | 1128 | WP_044744514.1 | SAM-dependent methyltransferase | - |
| GFC28_RS18170 (GFC28_3733) | - | 3746845..3747087 (-) | 243 | WP_044744513.1 | DUF2626 domain-containing protein | - |
| GFC28_RS18175 (GFC28_3734) | - | 3747232..3747936 (-) | 705 | WP_044744512.1 | helix-turn-helix domain-containing protein | - |
| GFC28_RS18180 (GFC28_3735) | comGA | 3748178..3749242 (+) | 1065 | WP_044744511.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GFC28_RS18185 (GFC28_3736) | comGB | 3749235..3750263 (+) | 1029 | WP_044744510.1 | competence type IV pilus assembly protein ComGB | - |
| GFC28_RS18190 (GFC28_3737) | comGC | 3750281..3750577 (+) | 297 | WP_080862312.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GFC28_RS18195 (GFC28_3738) | comGD | 3750561..3751007 (+) | 447 | WP_044744508.1 | competence type IV pilus minor pilin ComGD | - |
| GFC28_RS18200 (GFC28_3739) | comGE | 3750991..3751344 (+) | 354 | WP_044744507.1 | competence type IV pilus minor pilin ComGE | - |
| GFC28_RS18205 (GFC28_3740) | comGF | 3751295..3751753 (+) | 459 | WP_052660993.1 | competence type IV pilus minor pilin ComGF | - |
| GFC28_RS18210 (GFC28_3741) | comGG | 3751750..3752136 (+) | 387 | WP_044744505.1 | competence type IV pilus minor pilin ComGG | - |
| GFC28_RS18215 (GFC28_3742) | - | 3752489..3753004 (+) | 516 | WP_044744504.1 | shikimate kinase | - |
| GFC28_RS18220 (GFC28_3743) | - | 3753029..3753208 (+) | 180 | WP_044744503.1 | YqzE family protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39881.62 Da Isoelectric Point: 8.6943
>NTDB_id=179701 GFC28_RS18180 WP_044744511.1 3748178..3749242(+) (comGA) [Anoxybacillus sp. B2M1]
MNEIEQLADRLVKEASEIGASDIHIVPRRDDALIQFRMDGALVVKGMLEKGLYERLLVYFKFLADMDIGERRRPQSGAME
ITQNGVHVSLRLSTLPTLYDESLVIRLLPHNSLLPLSHLALFPSTTRILLSLLHHSHGLLIFTGPTGSGKTTTLYTLLAA
CQKKWPRNVITLEDPVEKRIENMLQVQVNEKAGITYATGLKAILRHDPDVVIVGEIRDEETAKIAVRAALTGHLILSTMH
TKNAIGAIYRLLEFGVSWREIEQTMLAVTAQRLVELMCPFCKEACSAFCRRQRKIRRAAVYECLHGEALARAIQAARGEE
VEYRYRTLQHMMKKGVALGFLSPSVFKREMIEDA
MNEIEQLADRLVKEASEIGASDIHIVPRRDDALIQFRMDGALVVKGMLEKGLYERLLVYFKFLADMDIGERRRPQSGAME
ITQNGVHVSLRLSTLPTLYDESLVIRLLPHNSLLPLSHLALFPSTTRILLSLLHHSHGLLIFTGPTGSGKTTTLYTLLAA
CQKKWPRNVITLEDPVEKRIENMLQVQVNEKAGITYATGLKAILRHDPDVVIVGEIRDEETAKIAVRAALTGHLILSTMH
TKNAIGAIYRLLEFGVSWREIEQTMLAVTAQRLVELMCPFCKEACSAFCRRQRKIRRAAVYECLHGEALARAIQAARGEE
VEYRYRTLQHMMKKGVALGFLSPSVFKREMIEDA
Nucleotide
Download Length: 1065 bp
>NTDB_id=179701 GFC28_RS18180 WP_044744511.1 3748178..3749242(+) (comGA) [Anoxybacillus sp. B2M1]
ATGAACGAAATTGAACAATTAGCGGATCGTCTCGTAAAAGAGGCGAGCGAAATCGGTGCCTCAGATATTCATATCGTTCC
AAGACGAGATGATGCCCTCATCCAGTTCCGCATGGATGGAGCGCTCGTTGTGAAGGGCATGCTGGAAAAGGGGTTATACG
AGCGGCTGCTTGTTTATTTTAAGTTTTTGGCGGATATGGATATTGGAGAGCGGCGTCGCCCGCAAAGCGGAGCCATGGAA
ATCACTCAAAACGGAGTTCATGTCAGCTTGCGCTTATCTACGCTTCCGACGCTTTATGATGAAAGCCTCGTGATTCGTCT
CCTTCCTCACAACTCACTTCTTCCTCTTTCACATCTTGCTTTATTTCCAAGCACAACGCGAATATTGCTGTCGCTTTTGC
ATCATTCCCACGGTTTGCTTATTTTTACGGGACCGACCGGTTCAGGAAAGACGACCACTTTATATACGCTGTTAGCAGCA
TGTCAGAAAAAGTGGCCACGCAATGTCATTACCTTGGAAGATCCTGTGGAAAAACGGATCGAAAATATGTTGCAAGTTCA
GGTCAATGAAAAGGCGGGGATCACGTATGCAACAGGGCTAAAGGCGATTTTGCGCCATGATCCCGATGTCGTGATCGTCG
GCGAAATCCGCGATGAAGAAACGGCGAAAATCGCGGTACGCGCCGCTTTGACAGGACATTTAATCTTATCGACGATGCAT
ACAAAAAATGCTATCGGTGCGATTTATCGCTTATTGGAGTTTGGCGTTTCTTGGCGGGAAATCGAACAAACGATGCTGGC
TGTGACAGCCCAACGCCTTGTTGAACTGATGTGCCCATTTTGCAAAGAAGCGTGTTCGGCTTTTTGCCGCCGGCAAAGGA
AGATCAGACGAGCGGCCGTTTACGAATGTTTGCATGGAGAGGCGCTGGCAAGAGCGATTCAAGCGGCAAGAGGAGAAGAG
GTGGAGTATCGGTATCGCACGCTGCAGCACATGATGAAAAAAGGAGTGGCGCTCGGCTTTTTATCACCTTCCGTTTTCAA
AAGAGAGATGATAGAAGATGCGTAA
ATGAACGAAATTGAACAATTAGCGGATCGTCTCGTAAAAGAGGCGAGCGAAATCGGTGCCTCAGATATTCATATCGTTCC
AAGACGAGATGATGCCCTCATCCAGTTCCGCATGGATGGAGCGCTCGTTGTGAAGGGCATGCTGGAAAAGGGGTTATACG
AGCGGCTGCTTGTTTATTTTAAGTTTTTGGCGGATATGGATATTGGAGAGCGGCGTCGCCCGCAAAGCGGAGCCATGGAA
ATCACTCAAAACGGAGTTCATGTCAGCTTGCGCTTATCTACGCTTCCGACGCTTTATGATGAAAGCCTCGTGATTCGTCT
CCTTCCTCACAACTCACTTCTTCCTCTTTCACATCTTGCTTTATTTCCAAGCACAACGCGAATATTGCTGTCGCTTTTGC
ATCATTCCCACGGTTTGCTTATTTTTACGGGACCGACCGGTTCAGGAAAGACGACCACTTTATATACGCTGTTAGCAGCA
TGTCAGAAAAAGTGGCCACGCAATGTCATTACCTTGGAAGATCCTGTGGAAAAACGGATCGAAAATATGTTGCAAGTTCA
GGTCAATGAAAAGGCGGGGATCACGTATGCAACAGGGCTAAAGGCGATTTTGCGCCATGATCCCGATGTCGTGATCGTCG
GCGAAATCCGCGATGAAGAAACGGCGAAAATCGCGGTACGCGCCGCTTTGACAGGACATTTAATCTTATCGACGATGCAT
ACAAAAAATGCTATCGGTGCGATTTATCGCTTATTGGAGTTTGGCGTTTCTTGGCGGGAAATCGAACAAACGATGCTGGC
TGTGACAGCCCAACGCCTTGTTGAACTGATGTGCCCATTTTGCAAAGAAGCGTGTTCGGCTTTTTGCCGCCGGCAAAGGA
AGATCAGACGAGCGGCCGTTTACGAATGTTTGCATGGAGAGGCGCTGGCAAGAGCGATTCAAGCGGCAAGAGGAGAAGAG
GTGGAGTATCGGTATCGCACGCTGCAGCACATGATGAAAAAAGGAGTGGCGCTCGGCTTTTTATCACCTTCCGTTTTCAA
AAGAGAGATGATAGAAGATGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
57.02 |
98.588 |
0.562 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.21 |
92.938 |
0.364 |