Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6046_RS04405 | Genome accession | NZ_CP015434 |
| Coordinates | 850431..850976 (-) | Length | 181 a.a. |
| NCBI ID | WP_010944348.1 | Uniprot ID | Q7VNZ5 |
| Organism | [Haemophilus] ducreyi strain GHA9 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 845431..855976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6046_RS04390 (A6046_04400) | dppD | 845999..847003 (+) | 1005 | WP_010944345.1 | dipeptide ABC transporter ATP-binding protein | - |
| A6046_RS04395 (A6046_04405) | - | 846981..847985 (+) | 1005 | WP_196757848.1 | peptide ABC transporter ATP-binding protein | - |
| A6046_RS04400 (A6046_04410) | - | 848042..850360 (-) | 2319 | WP_064083104.1 | Tex family protein | - |
| A6046_RS04405 (A6046_04415) | pilF | 850431..850976 (-) | 546 | WP_010944348.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6046_RS04410 (A6046_04420) | - | 851015..852109 (-) | 1095 | WP_231084876.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6046_RS04430 (A6046_04440) | gltX | 852961..854400 (+) | 1440 | WP_010944350.1 | glutamate--tRNA ligase | - |
| A6046_RS04440 (A6046_04450) | sodA | 854654..855295 (-) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6046_RS04445 (A6046_04455) | - | 855434..855787 (-) | 354 | WP_010944352.1 | RidA family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20237.97 Da Isoelectric Point: 8.1148
>NTDB_id=179650 A6046_RS04405 WP_010944348.1 850431..850976(-) (pilF) [[Haemophilus] ducreyi strain GHA9]
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179650 A6046_RS04405 WP_010944348.1 850431..850976(-) (pilF) [[Haemophilus] ducreyi strain GHA9]
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
58.289 |
100 |
0.602 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.889 |
99.448 |
0.436 |