Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6044_RS02720 Genome accession   NZ_CP015432
Coordinates   507808..508224 (-) Length   138 a.a.
NCBI ID   WP_010944893.1    Uniprot ID   Q7VML3
Organism   [Haemophilus] ducreyi strain GHA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 502808..513224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6044_RS02675 (A6044_02675) - 502858..504369 (-) 1512 WP_010944885.1 DNA topoisomerase 3 -
  A6044_RS02680 (A6044_02680) - 504366..504563 (-) 198 WP_010944886.1 hypothetical protein -
  A6044_RS08835 - 504693..505301 (+) 609 WP_231087896.1 hypothetical protein -
  A6044_RS02690 (A6044_02690) - 505652..506053 (-) 402 WP_064088557.1 hypothetical protein -
  A6044_RS02695 (A6044_02695) - 506149..506379 (-) 231 WP_010944889.1 hypothetical protein -
  A6044_RS08975 (A6044_02705) - 506668..506982 (-) 315 WP_081251344.1 DUF551 domain-containing protein -
  A6044_RS08765 (A6044_02710) - 506910..507161 (-) 252 WP_064088556.1 hypothetical protein -
  A6044_RS02715 (A6044_02715) - 507214..507717 (-) 504 WP_010944892.1 lipoprotein -
  A6044_RS02720 (A6044_02720) ssb 507808..508224 (-) 417 WP_010944893.1 single-stranded DNA-binding protein Machinery gene
  A6044_RS02725 (A6044_02725) - 508414..508593 (+) 180 WP_041603449.1 hypothetical protein -
  A6044_RS02730 (A6044_02730) - 508580..508828 (-) 249 WP_010944894.1 hypothetical protein -
  A6044_RS08980 - 509147..509449 (-) 303 WP_404810222.1 hypothetical protein -
  A6044_RS02740 (A6044_02740) - 509470..510237 (-) 768 WP_010944897.1 PFL_4669 family integrating conjugative element protein -
  A6044_RS08840 (A6044_02745) - 510314..510691 (-) 378 WP_010944898.1 hypothetical protein -
  A6044_RS08845 (A6044_02750) - 510711..511478 (-) 768 WP_010944899.1 STY4528 family pathogenicity island replication protein -
  A6044_RS02755 (A6044_02755) - 511681..512238 (-) 558 WP_010944900.1 DUF2857 domain-containing protein -
  A6044_RS08985 (A6044_02760) - 512225..512923 (-) 699 WP_010944901.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15635.52 Da        Isoelectric Point: 5.7075

>NTDB_id=179598 A6044_RS02720 WP_010944893.1 507808..508224(-) (ssb) [[Haemophilus] ducreyi strain GHA5]
MAGVNKVTILGNLGSDPDIRAMPNGDLTATVSVATSRQWKDQTTGETKELVEWHRIAFFRRLAEIVEQYLHKGSKIYVEG
YLRTRKWTDDNGIDRWTTEIIGEELQMLDSKPKDGHAANKSSKKSTTQQPEVDDDIPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=179598 A6044_RS02720 WP_010944893.1 507808..508224(-) (ssb) [[Haemophilus] ducreyi strain GHA5]
ATGGCAGGAGTAAATAAAGTTACAATTCTTGGAAATTTAGGCAGTGATCCGGATATCAGAGCAATGCCTAACGGAGACCT
AACGGCAACGGTTAGTGTCGCAACAAGTCGCCAATGGAAAGACCAGACGACGGGAGAAACAAAAGAATTGGTTGAATGGC
ACCGAATTGCTTTTTTTCGTCGCCTAGCAGAAATTGTTGAGCAGTATTTGCATAAGGGCTCAAAAATTTATGTAGAAGGT
TATCTACGTACCCGAAAATGGACAGATGATAACGGCATTGACCGCTGGACAACCGAAATTATCGGTGAAGAATTGCAGAT
GCTAGACAGCAAGCCGAAAGACGGACATGCAGCAAATAAGAGCAGTAAAAAATCAACGACACAACAACCCGAAGTAGATG
ATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7VML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.826

83.333

0.565
  ssb Vibrio cholerae strain A1552

44.275

94.928

0.42

Multiple sequence alignment