Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6043_RS01365 | Genome accession | NZ_CP015431 |
| Coordinates | 274762..275307 (-) | Length | 181 a.a. |
| NCBI ID | WP_010944348.1 | Uniprot ID | Q7VNZ5 |
| Organism | [Haemophilus] ducreyi strain GHA3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 269762..280307
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6043_RS01350 (A6043_01350) | dppD | 270330..271334 (+) | 1005 | WP_010944345.1 | dipeptide ABC transporter ATP-binding protein | - |
| A6043_RS01355 (A6043_01355) | - | 271312..272316 (+) | 1005 | WP_010944346.1 | peptide ABC transporter ATP-binding protein | - |
| A6043_RS01360 (A6043_01360) | - | 272373..274691 (-) | 2319 | WP_064083104.1 | Tex family protein | - |
| A6043_RS01365 (A6043_01365) | pilF | 274762..275307 (-) | 546 | WP_010944348.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6043_RS01370 (A6043_01370) | - | 275346..276440 (-) | 1095 | WP_231084876.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6043_RS01385 (A6043_01385) | gltX | 277156..278595 (+) | 1440 | WP_010944350.1 | glutamate--tRNA ligase | - |
| A6043_RS01395 (A6043_01395) | sodA | 278849..279490 (-) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6043_RS01400 (A6043_01400) | - | 279629..279982 (-) | 354 | WP_010944352.1 | RidA family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20237.97 Da Isoelectric Point: 8.1148
>NTDB_id=179573 A6043_RS01365 WP_010944348.1 274762..275307(-) (pilF) [[Haemophilus] ducreyi strain GHA3]
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179573 A6043_RS01365 WP_010944348.1 274762..275307(-) (pilF) [[Haemophilus] ducreyi strain GHA3]
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
58.289 |
100 |
0.602 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.889 |
99.448 |
0.436 |