Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6042_RS03730 | Genome accession | NZ_CP015430 |
| Coordinates | 801382..801927 (+) | Length | 181 a.a. |
| NCBI ID | WP_064082520.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain GHA2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 796382..806927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6042_RS03690 (A6042_03695) | - | 796561..796914 (+) | 354 | WP_064082523.1 | RidA family protein | - |
| A6042_RS03695 (A6042_03700) | sodA | 797054..797695 (+) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6042_RS03705 (A6042_03710) | gltX | 797949..799388 (-) | 1440 | WP_064082522.1 | glutamate--tRNA ligase | - |
| A6042_RS03725 (A6042_03730) | - | 800162..801343 (+) | 1182 | WP_064082521.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6042_RS03730 (A6042_03735) | pilF | 801382..801927 (+) | 546 | WP_064082520.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6042_RS03735 (A6042_03740) | - | 801998..804316 (+) | 2319 | WP_064083417.1 | Tex family protein | - |
| A6042_RS03740 (A6042_03745) | - | 804373..805377 (-) | 1005 | WP_196757910.1 | peptide ABC transporter ATP-binding protein | - |
| A6042_RS03745 (A6042_03750) | dppD | 805355..806359 (-) | 1005 | WP_064082518.1 | dipeptide ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20343.02 Da Isoelectric Point: 8.1148
>NTDB_id=179553 A6042_RS03730 WP_064082520.1 801382..801927(+) (pilF) [[Haemophilus] ducreyi strain GHA2]
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179553 A6042_RS03730 WP_064082520.1 801382..801927(+) (pilF) [[Haemophilus] ducreyi strain GHA2]
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.591 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.182 |
97.238 |
0.42 |