Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6041_RS07365 | Genome accession | NZ_CP015429 |
| Coordinates | 1556332..1556877 (-) | Length | 181 a.a. |
| NCBI ID | WP_064082520.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain GHA1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1551332..1561877
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6041_RS07350 (A6041_07355) | dppD | 1551900..1552904 (+) | 1005 | WP_064082518.1 | dipeptide ABC transporter ATP-binding protein | - |
| A6041_RS07355 (A6041_07360) | - | 1552882..1553886 (+) | 1005 | WP_196757910.1 | peptide ABC transporter ATP-binding protein | - |
| A6041_RS07360 (A6041_07365) | - | 1553943..1556261 (-) | 2319 | WP_064083417.1 | Tex family protein | - |
| A6041_RS07365 (A6041_07370) | pilF | 1556332..1556877 (-) | 546 | WP_064082520.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6041_RS07370 (A6041_07375) | - | 1556916..1558097 (-) | 1182 | WP_064082521.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6041_RS07390 (A6041_07395) | gltX | 1558871..1560310 (+) | 1440 | WP_064082522.1 | glutamate--tRNA ligase | - |
| A6041_RS07400 (A6041_07405) | sodA | 1560564..1561205 (-) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6041_RS07405 (A6041_07410) | - | 1561345..1561698 (-) | 354 | WP_064082523.1 | RidA family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20343.02 Da Isoelectric Point: 8.1148
>NTDB_id=179541 A6041_RS07365 WP_064082520.1 1556332..1556877(-) (pilF) [[Haemophilus] ducreyi strain GHA1]
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179541 A6041_RS07365 WP_064082520.1 1556332..1556877(-) (pilF) [[Haemophilus] ducreyi strain GHA1]
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.591 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.182 |
97.238 |
0.42 |