Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6039_RS07075 | Genome accession | NZ_CP015427 |
| Coordinates | 1457476..1458021 (+) | Length | 181 a.a. |
| NCBI ID | WP_010944348.1 | Uniprot ID | Q7VNZ5 |
| Organism | [Haemophilus] ducreyi strain VAN4 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1452476..1463021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6039_RS07040 (A6039_07065) | - | 1452801..1453154 (+) | 354 | WP_010944352.1 | RidA family protein | - |
| A6039_RS07045 (A6039_07070) | sodA | 1453293..1453934 (+) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6039_RS07055 (A6039_07080) | gltX | 1454188..1455627 (-) | 1440 | WP_010944350.1 | glutamate--tRNA ligase | - |
| A6039_RS07070 (A6039_07095) | - | 1456343..1457437 (+) | 1095 | WP_231084876.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6039_RS07075 (A6039_07100) | pilF | 1457476..1458021 (+) | 546 | WP_010944348.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6039_RS07080 (A6039_07105) | - | 1458092..1460410 (+) | 2319 | WP_064083104.1 | Tex family protein | - |
| A6039_RS07085 (A6039_07110) | - | 1460467..1461471 (-) | 1005 | WP_010944346.1 | peptide ABC transporter ATP-binding protein | - |
| A6039_RS07090 (A6039_07115) | dppD | 1461449..1462453 (-) | 1005 | WP_010944345.1 | dipeptide ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20237.97 Da Isoelectric Point: 8.1148
>NTDB_id=179497 A6039_RS07075 WP_010944348.1 1457476..1458021(+) (pilF) [[Haemophilus] ducreyi strain VAN4]
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179497 A6039_RS07075 WP_010944348.1 1457476..1458021(+) (pilF) [[Haemophilus] ducreyi strain VAN4]
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
58.289 |
100 |
0.602 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.889 |
99.448 |
0.436 |