Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6038_RS02300 | Genome accession | NZ_CP015426 |
| Coordinates | 441107..441652 (-) | Length | 181 a.a. |
| NCBI ID | WP_010944348.1 | Uniprot ID | Q7VNZ5 |
| Organism | [Haemophilus] ducreyi strain VAN3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 436107..446652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6038_RS02285 (A6038_02285) | dppD | 436675..437679 (+) | 1005 | WP_010944345.1 | dipeptide ABC transporter ATP-binding protein | - |
| A6038_RS02290 (A6038_02290) | - | 437657..438661 (+) | 1005 | WP_010944346.1 | peptide ABC transporter ATP-binding protein | - |
| A6038_RS02295 (A6038_02295) | - | 438718..441036 (-) | 2319 | WP_064083104.1 | Tex family protein | - |
| A6038_RS02300 (A6038_02300) | pilF | 441107..441652 (-) | 546 | WP_010944348.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6038_RS02305 (A6038_02305) | - | 441691..442785 (-) | 1095 | WP_231084876.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6038_RS02320 (A6038_02320) | gltX | 443501..444940 (+) | 1440 | WP_010944350.1 | glutamate--tRNA ligase | - |
| A6038_RS02330 (A6038_02330) | sodA | 445194..445835 (-) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6038_RS02335 (A6038_02335) | - | 445974..446327 (-) | 354 | WP_010944352.1 | RidA family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20237.97 Da Isoelectric Point: 8.1148
>NTDB_id=179465 A6038_RS02300 WP_010944348.1 441107..441652(-) (pilF) [[Haemophilus] ducreyi strain VAN3]
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179465 A6038_RS02300 WP_010944348.1 441107..441652(-) (pilF) [[Haemophilus] ducreyi strain VAN3]
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
58.289 |
100 |
0.602 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.889 |
99.448 |
0.436 |