Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6037_RS04710 | Genome accession | NZ_CP015425 |
| Coordinates | 957469..958014 (-) | Length | 181 a.a. |
| NCBI ID | WP_064082520.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain VAN2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 952469..963014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6037_RS04695 (A6037_04715) | dppD | 953037..954041 (+) | 1005 | WP_064082518.1 | dipeptide ABC transporter ATP-binding protein | - |
| A6037_RS04700 (A6037_04720) | - | 954019..955023 (+) | 1005 | WP_010944346.1 | peptide ABC transporter ATP-binding protein | - |
| A6037_RS04705 (A6037_04725) | - | 955080..957398 (-) | 2319 | WP_064082519.1 | Tex family protein | - |
| A6037_RS04710 (A6037_04730) | pilF | 957469..958014 (-) | 546 | WP_064082520.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6037_RS04715 (A6037_04735) | - | 958053..959147 (-) | 1095 | WP_231087464.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6037_RS04735 (A6037_04755) | gltX | 960008..961447 (+) | 1440 | WP_064082522.1 | glutamate--tRNA ligase | - |
| A6037_RS04745 (A6037_04765) | sodA | 961701..962342 (-) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| A6037_RS04750 (A6037_04770) | - | 962482..962835 (-) | 354 | WP_064082523.1 | RidA family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20343.02 Da Isoelectric Point: 8.1148
>NTDB_id=179448 A6037_RS04710 WP_064082520.1 957469..958014(-) (pilF) [[Haemophilus] ducreyi strain VAN2]
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
MAKILKNITACFTIVMLLGCSSSYTSSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSAQAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KITIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=179448 A6037_RS04710 WP_064082520.1 957469..958014(-) (pilF) [[Haemophilus] ducreyi strain VAN2]
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATATAACCGCTTGTTTCACTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTAGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACAGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCCAACGCCTACCAAACAGCACTAACTCTAGGAAATAATACACCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCAAAACAAGAGAAAAATACCGCT
AAAATAACTATTGCATTACAACAATTAACAGCACTAGACAAAACACGCGCAGATGCACTACGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.591 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.182 |
97.238 |
0.42 |