Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4V07_RS08220 | Genome accession | NZ_CP015408 |
| Coordinates | 1677999..1678562 (+) | Length | 187 a.a. |
| NCBI ID | WP_065533485.1 | Uniprot ID | A0A1X8VB96 |
| Organism | Limosilactobacillus reuteri strain I49 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1672999..1683562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4V07_RS08210 (A4V07_08115) | gyrA | 1674958..1677462 (+) | 2505 | WP_065533484.1 | DNA gyrase subunit A | - |
| A4V07_RS08215 (A4V07_08120) | rpsF | 1677665..1677961 (+) | 297 | WP_003665235.1 | 30S ribosomal protein S6 | - |
| A4V07_RS08220 (A4V07_08125) | ssb | 1677999..1678562 (+) | 564 | WP_065533485.1 | single-stranded DNA-binding protein | Machinery gene |
| A4V07_RS08225 (A4V07_08130) | rpsR | 1678596..1678832 (+) | 237 | WP_003665240.1 | 30S ribosomal protein S18 | - |
| A4V07_RS08230 (A4V07_08135) | - | 1679049..1681067 (+) | 2019 | WP_065533486.1 | DHH family phosphoesterase | - |
| A4V07_RS08235 (A4V07_08140) | rplI | 1681073..1681525 (+) | 453 | WP_003665243.1 | 50S ribosomal protein L9 | - |
| A4V07_RS08240 (A4V07_08145) | dnaB | 1681559..1682950 (+) | 1392 | WP_003665244.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 20565.24 Da Isoelectric Point: 4.4652
>NTDB_id=179238 A4V07_RS08220 WP_065533485.1 1677999..1678562(+) (ssb) [Limosilactobacillus reuteri strain I49]
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQSGVQQPFNNNQQSFGAQAPQYGSQPQPGNNAPQSNPSPSMDNGFDSN
QNAGNQFPGSSDDGGQSIDLADDELPF
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQSGVQQPFNNNQQSFGAQAPQYGSQPQPGNNAPQSNPSPSMDNGFDSN
QNAGNQFPGSSDDGGQSIDLADDELPF
Nucleotide
Download Length: 564 bp
>NTDB_id=179238 A4V07_RS08220 WP_065533485.1 1677999..1678562(+) (ssb) [Limosilactobacillus reuteri strain I49]
ATGCTTAATCGTGCAGTCTTAACTGGGCGTTTAACAAGAGATCCCGAGTTGCGGTACACAACCAGCGGGACAGCAGTTGT
TTCATTTACGTTAGCTGTTGATCGGCAATTCCGAAACCAAAATGGTGATCGTGATGCTGATTTTATCAATTGCGTTATTT
GGCGTAAATCCGCTGAAAACTTTAGTAACTTTACGCATAAGGGTTCACTTGTTGGAATTGAAGGGCGTATTCAAACCCGG
AATTATGAAAACCAACAGGGTAACCGTGTGTATGTTACCGAAGTTGTTGTAGATAACTTTGCATTGTTAGAACCTCGTCA
AAATGGTGGCATGAACCAATCAGGCGTGCAACAACCATTTAATAATAACCAGCAATCGTTTGGTGCTCAGGCTCCACAAT
ATGGCAGTCAACCACAACCTGGAAATAATGCTCCTCAAAGTAATCCGTCACCAAGTATGGATAATGGTTTCGATTCCAAT
CAAAATGCTGGCAACCAGTTCCCTGGAAGCAGTGATGATGGTGGTCAATCCATTGATTTAGCTGATGACGAATTACCATT
CTAA
ATGCTTAATCGTGCAGTCTTAACTGGGCGTTTAACAAGAGATCCCGAGTTGCGGTACACAACCAGCGGGACAGCAGTTGT
TTCATTTACGTTAGCTGTTGATCGGCAATTCCGAAACCAAAATGGTGATCGTGATGCTGATTTTATCAATTGCGTTATTT
GGCGTAAATCCGCTGAAAACTTTAGTAACTTTACGCATAAGGGTTCACTTGTTGGAATTGAAGGGCGTATTCAAACCCGG
AATTATGAAAACCAACAGGGTAACCGTGTGTATGTTACCGAAGTTGTTGTAGATAACTTTGCATTGTTAGAACCTCGTCA
AAATGGTGGCATGAACCAATCAGGCGTGCAACAACCATTTAATAATAACCAGCAATCGTTTGGTGCTCAGGCTCCACAAT
ATGGCAGTCAACCACAACCTGGAAATAATGCTCCTCAAAGTAATCCGTCACCAAGTATGGATAATGGTTTCGATTCCAAT
CAAAATGCTGGCAACCAGTTCCCTGGAAGCAGTGATGATGGTGGTCAATCCATTGATTTAGCTGATGACGAATTACCATT
CTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.043 |
100 |
0.594 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.895 |
100 |
0.487 |