Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | Aba3207_RS20980 | Genome accession | NZ_CP015364 |
| Coordinates | 2696393..2697253 (-) | Length | 286 a.a. |
| NCBI ID | WP_001152284.1 | Uniprot ID | A0A3R9CN06 |
| Organism | Acinetobacter baumannii strain 3207 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2691393..2702253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba3207_RS13100 (Aba3207_13100) | - | 2692323..2693594 (+) | 1272 | WP_000610365.1 | tetratricopeptide repeat protein | - |
| Aba3207_RS13105 (Aba3207_13105) | - | 2693671..2693997 (+) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| Aba3207_RS13110 (Aba3207_13110) | rlmB | 2694099..2694848 (+) | 750 | WP_001118149.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| Aba3207_RS13115 (Aba3207_13115) | - | 2694884..2695798 (+) | 915 | WP_000075011.1 | DMT family transporter | - |
| Aba3207_RS13120 (Aba3207_13120) | coaE | 2695795..2696391 (-) | 597 | WP_000874127.1 | dephospho-CoA kinase | - |
| Aba3207_RS20980 (Aba3207_13125) | pilD | 2696393..2697253 (-) | 861 | WP_001152284.1 | prepilin peptidase | Machinery gene |
| Aba3207_RS13130 (Aba3207_13130) | pilC | 2697253..2698479 (-) | 1227 | WP_000279218.1 | type II secretion system F family protein | Machinery gene |
| Aba3207_RS13135 (Aba3207_13135) | pilB | 2698509..2700221 (-) | 1713 | WP_001274984.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Aba3207_RS13140 (Aba3207_13140) | tpiA | 2700512..2701306 (+) | 795 | WP_000016939.1 | triose-phosphate isomerase | - |
| Aba3207_RS13145 (Aba3207_13145) | secG | 2701319..2701648 (+) | 330 | WP_000555570.1 | preprotein translocase subunit SecG | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32189.64 Da Isoelectric Point: 7.5058
>NTDB_id=178850 Aba3207_RS20980 WP_001152284.1 2696393..2697253(-) (pilD) [Acinetobacter baumannii strain 3207]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=178850 Aba3207_RS20980 WP_001152284.1 2696393..2697253(-) (pilD) [Acinetobacter baumannii strain 3207]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter nosocomialis M2 |
98.252 |
100 |
0.983 |
| pilD | Acinetobacter baumannii D1279779 |
97.902 |
100 |
0.979 |
| pilD | Vibrio cholerae strain A1552 |
53.309 |
95.105 |
0.507 |
| pilD | Vibrio campbellii strain DS40M4 |
52.555 |
95.804 |
0.503 |
| pilD | Neisseria gonorrhoeae MS11 |
47.348 |
92.308 |
0.437 |