Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Aba3207_RS09750 Genome accession   NZ_CP015364
Coordinates   1983188..1984006 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 3207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978188..1989006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba3207_RS09735 (Aba3207_09730) pilE 1978406..1978831 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  Aba3207_RS09740 (Aba3207_09735) pilY2 1978828..1979310 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  Aba3207_RS09745 (Aba3207_09740) - 1979323..1983176 (-) 3854 Protein_1937 PilC/PilY family type IV pilus protein -
  Aba3207_RS09750 (Aba3207_09745) pilX 1983188..1984006 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Aba3207_RS09755 (Aba3207_09750) pilW 1984003..1985004 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  Aba3207_RS09760 (Aba3207_09755) pilV 1985005..1985565 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  Aba3207_RS09765 (Aba3207_09760) fimU 1985559..1986032 (-) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  Aba3207_RS09770 (Aba3207_09765) ispH 1986202..1987152 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Aba3207_RS09775 (Aba3207_09770) gmk 1987275..1987904 (+) 630 WP_000015937.1 guanylate kinase -
  Aba3207_RS09780 (Aba3207_09775) rpoZ 1987977..1988255 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Aba3207_RS20375 - 1988294..1988424 (+) 131 Protein_1945 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=178818 Aba3207_RS09750 WP_000149374.1 1983188..1984006(-) (pilX) [Acinetobacter baumannii strain 3207]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=178818 Aba3207_RS09750 WP_000149374.1 1983188..1984006(-) (pilX) [Acinetobacter baumannii strain 3207]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment