Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Aba3207_RS09735 Genome accession   NZ_CP015364
Coordinates   1978406..1978831 (-) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain 3207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1973406..1983831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba3207_RS09705 (Aba3207_09700) - 1973938..1974969 (+) 1032 WP_001189457.1 lipase secretion chaperone -
  Aba3207_RS09710 (Aba3207_09705) - 1975084..1976025 (+) 942 WP_085943974.1 lipase family alpha/beta hydrolase -
  Aba3207_RS09715 (Aba3207_09710) rplS 1976078..1976446 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  Aba3207_RS09720 (Aba3207_09715) trmD 1976654..1977394 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Aba3207_RS09725 (Aba3207_09720) rimM 1977440..1977988 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  Aba3207_RS09730 (Aba3207_09725) rpsP 1978008..1978259 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  Aba3207_RS09735 (Aba3207_09730) pilE 1978406..1978831 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  Aba3207_RS09740 (Aba3207_09735) pilY2 1978828..1979310 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  Aba3207_RS09745 (Aba3207_09740) - 1979323..1983176 (-) 3854 Protein_1937 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=178816 Aba3207_RS09735 WP_000788337.1 1978406..1978831(-) (pilE) [Acinetobacter baumannii strain 3207]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=178816 Aba3207_RS09735 WP_000788337.1 1978406..1978831(-) (pilE) [Acinetobacter baumannii strain 3207]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496

Multiple sequence alignment