Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   FORC54_RS04330 Genome accession   NZ_CP019121
Coordinates   904449..907853 (+) Length   1134 a.a.
NCBI ID   WP_101958400.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 899449..912853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS04305 (FORC54_0823) sucC 899637..900803 (+) 1167 WP_017421012.1 ADP-forming succinate--CoA ligase subunit beta -
  FORC54_RS04310 (FORC54_0824) sucD 900803..901675 (+) 873 WP_017421011.1 succinate--CoA ligase subunit alpha -
  FORC54_RS04315 (FORC54_0825) znuB 901757..902542 (-) 786 WP_017421010.1 zinc ABC transporter permease subunit ZnuB -
  FORC54_RS04320 (FORC54_0826) znuC 902535..903320 (-) 786 WP_017421009.1 zinc ABC transporter ATP-binding protein ZnuC -
  FORC54_RS04325 (FORC54_0827) znuA 903402..904277 (+) 876 WP_101958399.1 zinc ABC transporter substrate-binding protein ZnuA -
  FORC54_RS04330 (FORC54_0828) tfoS 904449..907853 (+) 3405 WP_101958400.1 AraC family transcriptional regulator Regulator
  FORC54_RS04335 - 908637..908864 (+) 228 WP_017421006.1 FeoA family protein -
  FORC54_RS04340 (FORC54_0830) feoB 908864..911140 (+) 2277 WP_101958401.1 Fe(2+) transporter permease subunit FeoB -
  FORC54_RS04345 (FORC54_0831) - 911137..911367 (+) 231 WP_038968900.1 FeoC-like transcriptional regulator -
  FORC54_RS04350 (FORC54_0832) - 911476..911904 (-) 429 WP_026050454.1 HIT family protein -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126475.04 Da        Isoelectric Point: 5.4504

>NTDB_id=178765 FORC54_RS04330 WP_101958400.1 904449..907853(+) (tfoS) [Vibrio vulnificus strain FORC_054]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
FPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLNGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLITDASGIWMVSS
IGLSFYNFDGALRKHFGSRSGIMSNEFVEGSCAASFGEAQSGSVLVLGSKHGLVFADRDDLMVSKLPEPRVVISQARIDD
QVANVGQKEWQLPELAYGSAISFGLGVMPNAYGETLHYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELSKIGVQVHI
SSESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTNTDAEDSAAVEPAKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDPSPVTEVSSEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKMLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDAIESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=178765 FORC54_RS04330 WP_101958400.1 904449..907853(+) (tfoS) [Vibrio vulnificus strain FORC_054]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCAGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCTGCTAAAAATCTCTTTGTTGGTGGTGATGGTGGTT
TATGGATACATGACGTGCACGGCAAAGTGCAATATTTCGATGGTAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TTTCCTTCCGAGCAAGTAGCCTTTCACCAAGGCAGTTTTTGGACTTTTGTCGCAAACGAAGTCTTCCAAACGTACCCCAA
TCAGAAACGTCAGTTAGCGTTTAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGTCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACTTATTCCTTACTCTCGTTGTATCAA
AATAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGAGGGTTTTAAGCAAATGGGTACTTGGTACCACATCGGGAGC
TTATCTATCACAAGGTGAGCAATTTACTCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCCA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGTGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACAGAACATGGTCTGTACAGTTA
CTCGTTTTTAAATGGACAAGTGGCCAAAGTGAAAGCCGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGCTGGTGAATGATGAACAAGGGGGCATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAACATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATACAGCCGCGTGCGTTTGC
CGATAAAGGTAAATGACTTTGCCCTTGAAGATGGAAACATCTGGATTGCTTCCGAGCAAGGTTTGTATATTTACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCGAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTTAGCCCTCA
AGGCAAGGTTTGGATCAGTTCGGGTTATCGATTAGCCGCCATTGGCGTTGCCGATGGGCGCTTCCAGGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTAGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCTTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGCGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTTTGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCCTAATCACCGATGCTAGTGGCATTTGGATGGTGAGTTCA
ATTGGCCTCAGTTTTTACAATTTTGACGGAGCACTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAACGAGTT
CGTTGAAGGCTCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAGCATGGCTTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGCTCGTATTGATGAT
CAGGTTGCAAATGTCGGACAAAAAGAGTGGCAATTACCCGAGTTAGCGTATGGTTCTGCGATCAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTACATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCCGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGTTTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCGATTTTTGTTCTGCTTATCGTAGCGTTAGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACGGCATTGGTGGCATTGAAGACCAATCAAT
TACGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGCAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTGAGCAAGCCATCGGTTGAACCTGCCTCAGAGTATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGTTAAAAAGCTCGCCCAGCGATGGAACTGACGGGTATCTGCAAAACT
TTAACGTCAGCCATATCATTCAGTCGGTTGTCGACGTTTGGGAAGATGAACTCAGTAAAATCGGTGTTCAGGTGCACATT
TCTAGCGAATCGGATGACTATCGTGTCGCAGTAGGGCAGTTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTTGATATTGTGATCAGAGAGCAAAACGATTTTGTCGAAGTGTCATTTATTG
ATTTTGGCCAGCCCTTTAGTACGAATACGGACGCCGAGGATAGCGCTGCTGTTGAGCCAGCAAAAGTCGATACTGCAATT
GAGAAGCTACCTGCTTTAGTCGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGACGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCCCTCTCCAG
TTACGGAAGTCTCATCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAGATGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACCGAAGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCCGGTG
AAAAAGTGGTTGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCCTATTTTAGTCAACGTTTTAAACTGTACTTTGGC
GTGCCCCCTTCAAAATTTGCCAGTGACGCTATAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.423

100

0.398

Multiple sequence alignment