Detailed information NTG0178761

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FORC54_RS02740
• Genome accession: NZ_CP019121
• Coordinates: 577934..580507 (+)
• Length: 857 a.a.
• NCBI ID: WP_017789378.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_054
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 572934..585507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC54_RS02715 (FORC54_0528)	pheA	573159..574337 (-)	1179	WP_011078576.1	prephenate dehydratase	-
FORC54_RS02720 (FORC54_0529)	hpf	574581..574904 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
FORC54_RS02725 (FORC54_0530)	comL	575257..575982 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
FORC54_RS02730 (FORC54_0531)	rluD	576119..577096 (+)	978	WP_017789380.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FORC54_RS02735 (FORC54_0532)	pgeF	577100..577816 (+)	717	WP_170861647.1	peptidoglycan editing factor PgeF	-
FORC54_RS02740 (FORC54_0533)	clpC	577934..580507 (+)	2574	WP_017789378.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96042.94 Da
• Isoelectric Point: 5.2921

>NTDB_id=178761 FORC54_RS02740 WP_017789378.1 577934..580507(+) (clpC) [Vibrio vulnificus strain FORC_054]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLATRMEEHGYQLEVSDKAL
DLIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=178761 FORC54_RS02740 WP_017789378.1 577934..580507(+) (clpC) [Vibrio vulnificus strain FORC_054]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAATGGCAGTCCTATTCGTCCACTGTTGACCATCTTAA
ATGTGGATGTCACCCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGCTTACCCAAAGTGAGCGGTATTGGCGGTGAT
GTACAGCTCTCCTCGGCCATGGGCGCGATGTTTAACCTGTGCGATAAGATTGCGCAAAAACGCCAAGATGCTTACATCTC
ATCGGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGGCCACTTGGTCAACTCTTCAAAGAACTTGGCTTAACCGAAC
AAAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGCGCAGAGCAGGGCAAACTTGACCCTGTGATTGGTCGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGTACCAAAAACAACCCCGTGATCATTGGTGAACCCGGTGTCGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTGCCTGAAGGTCTGCGTGGTCGCCGAGTATTGTCACTC
GATATGGGCGCTTTGGTGGCTGGAGCGAAGTACCGTGGTGAGTTTGAAGAGCGACTTAAATCCGTATTGAATGAGCTCTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGTTCGATGG
ATGCCGGCAATATGCTCAAGCCCGCACTAGCGCGTGGTGAGTTACATTGTGTGGGCGCCACGACACTCGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCTCTTGAGCGCCGCTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTGGAAGACACCAT
TGCGATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCACCATCACGTTGAGATCACCGATCCTGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGATAAGGCGATCGATCTTATCGACGAAGCAGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAATTGGAGCGCAAAATCATCCAGCTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAGAAGCGTCTGCGCTCACTCAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCAGCCCTATCTGGCACTCAGCATATTAAAGCAGCGTTAGAG
CAAGCGCGTATGGATATGGAGTTTGCAAGACGAGCTGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGTCGTATTCC
AGAGCTTGAGAAGCAACTTGACTTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCAAAGCAAACGGGTATCCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGCTACATAAACGTGTCATTGGGCAGAAAGAGGCGGTGGAAGTGGTCTCTAATGCGATACGCCGAAG
CCGTGCTGGCTTGTCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAGGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTGGCGCGCTTAGTCGGTGCACCTCCAGGCTATGTGGGTTATGAAGAAGGTGGCTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAAGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTTATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTAATGGAAGTGGTGACCAA
GCACTTTAGGCCGGAGTTTTTGAACCGTGTTGATGAGACAGTTGTCTTCCACCCACTAGGCCAAGACCACATTAAGTCGA
TCGCTGCGATTCAACTTAACCGCTTGGCGACTCGCATGGAAGAGCATGGCTATCAATTGGAAGTGTCCGATAAAGCGCTC
GACTTGATCGCGCAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.637	99.767	0.415
clpE	Streptococcus mutans UA159	47.865	79.23	0.379
clpE	Streptococcus pneumoniae D39	47.858	78.996	0.378
clpE	Streptococcus pneumoniae Rx1	47.858	78.996	0.378
clpE	Streptococcus pneumoniae R6	47.858	78.996	0.378
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.397	0.37