Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC54_RS02725 Genome accession   NZ_CP019121
Coordinates   575257..575982 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain FORC_054     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570257..580982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS02700 (FORC54_0525) sltY 570289..572244 (+) 1956 WP_101958341.1 murein transglycosylase -
  FORC54_RS02705 (FORC54_0526) trpR 572260..572568 (+) 309 WP_011078578.1 trp operon repressor -
  FORC54_RS02710 (FORC54_0527) yjjX 572598..573134 (-) 537 WP_039545962.1 inosine/xanthosine triphosphatase -
  FORC54_RS02715 (FORC54_0528) pheA 573159..574337 (-) 1179 WP_011078576.1 prephenate dehydratase -
  FORC54_RS02720 (FORC54_0529) hpf 574581..574904 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC54_RS02725 (FORC54_0530) comL 575257..575982 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  FORC54_RS02730 (FORC54_0531) rluD 576119..577096 (+) 978 WP_017789380.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC54_RS02735 (FORC54_0532) pgeF 577100..577816 (+) 717 WP_170861647.1 peptidoglycan editing factor PgeF -
  FORC54_RS02740 (FORC54_0533) clpC 577934..580507 (+) 2574 WP_017789378.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=178760 FORC54_RS02725 WP_011078574.1 575257..575982(-) (comL) [Vibrio vulnificus strain FORC_054]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=178760 FORC54_RS02725 WP_011078574.1 575257..575982(-) (comL) [Vibrio vulnificus strain FORC_054]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACCGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACTATCTCTCGTTTTACGCGTTTAAATCCAACACATGAGAAAATGGATTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCACAAGATCGTAACTTCATGCATGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAACCAGTAAAGCAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTACCCAAACAGCCCATATGCGGAAGAT
TCGCAAAAGCGCATGTTTGCTCTAAAAAACCGTTTAGCAGAATATGACCTAGCAACCGCTGATTATTATTTGCGTCGCGA
AGCTTGGATTGCAGCCATCAACCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment