Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC54_RS00825 Genome accession   NZ_CP019121
Coordinates   179748..180422 (+) Length   224 a.a.
NCBI ID   WP_017789148.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 174748..185422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS00805 (FORC54_0148) - 174795..175733 (-) 939 WP_039541040.1 Kdo(2)-lipid IV(A) acyltransferase -
  FORC54_RS00810 (FORC54_0149) slmA 175737..176327 (-) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  FORC54_RS00815 (FORC54_0150) coaBC 176478..177683 (-) 1206 WP_095430444.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC54_RS00820 (FORC54_0151) - 177967..179634 (+) 1668 WP_038969595.1 methyl-accepting chemotaxis protein -
  FORC54_RS00825 (FORC54_0152) radC 179748..180422 (+) 675 WP_017789148.1 RadC family protein Machinery gene
  FORC54_RS00830 (FORC54_0153) rpmB 180734..180970 (+) 237 WP_011078894.1 50S ribosomal protein L28 -
  FORC54_RS00835 (FORC54_0154) rpmG 180986..181156 (+) 171 WP_011078893.1 50S ribosomal protein L33 -
  FORC54_RS00840 (FORC54_0155) - 181425..181922 (+) 498 WP_017420464.1 hypothetical protein -
  FORC54_RS00845 (FORC54_0156) mutM 181952..182761 (+) 810 WP_039468947.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC54_RS00850 (FORC54_0157) - 182909..184885 (+) 1977 WP_080540327.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25341.01 Da        Isoelectric Point: 7.1311

>NTDB_id=178756 FORC54_RS00825 WP_017789148.1 179748..180422(+) (radC) [Vibrio vulnificus strain FORC_054]
MSLKNLPSESMPREKLLQRGPESLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=178756 FORC54_RS00825 WP_017789148.1 179748..180422(+) (radC) [Vibrio vulnificus strain FORC_054]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCGTGGGCCTGAGTCTTTGTCCGATGC
CGAGTTACTCGCCATCTTTTTAAGAACAGGCACACAAGGAATGAACGTGATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGTTCGCTGAGAAAACTGTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTCACCAGTCCACA
GCATACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGTCATCGAGAAGCGTTTTATGTGTTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCCGCCGCTTTAATACTGGCACACAACCATCCCTCAGGCGTAGCAGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTAGACCACTTTGTTGTCGGCGATGGAG
AGGTAGTGTCATTTGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379