Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   BRL61_RS10315 Genome accession   NZ_CP019117
Coordinates   2002610..2003320 (+) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SJTUF_J27     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997610..2008320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL61_RS10255 (BRL61_10250) - 1997875..1998513 (-) 639 WP_001043063.1 ERF family protein -
  BRL61_RS10260 (BRL61_10255) - 1998513..1998992 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  BRL61_RS10265 (BRL61_10260) - 1999007..1999267 (-) 261 WP_000291093.1 DUF1108 family protein -
  BRL61_RS10270 (BRL61_10265) - 1999361..1999681 (-) 321 WP_000219664.1 hypothetical protein -
  BRL61_RS10275 (BRL61_10270) - 1999682..1999849 (-) 168 WP_000048122.1 DUF1270 domain-containing protein -
  BRL61_RS10280 (BRL61_10275) - 1999842..2000063 (-) 222 WP_000594788.1 hypothetical protein -
  BRL61_RS10285 (BRL61_10280) - 2000135..2000365 (+) 231 WP_000395456.1 hypothetical protein -
  BRL61_RS10290 (BRL61_10285) - 2000532..2001329 (-) 798 WP_015980402.1 phage antirepressor Ant -
  BRL61_RS10295 (BRL61_10290) - 2001386..2001595 (+) 210 WP_000772137.1 hypothetical protein -
  BRL61_RS10300 (BRL61_10295) - 2001588..2001728 (-) 141 WP_000939495.1 hypothetical protein -
  BRL61_RS10305 (BRL61_10300) - 2001743..2002186 (-) 444 WP_000435360.1 hypothetical protein -
  BRL61_RS10310 (BRL61_10305) - 2002199..2002438 (-) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  BRL61_RS10315 (BRL61_10310) irvR 2002610..2003320 (+) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  BRL61_RS14945 - 2003332..2003478 (+) 147 WP_001049401.1 hypothetical protein -
  BRL61_RS10320 (BRL61_10315) - 2003475..2003660 (+) 186 WP_000100503.1 hypothetical protein -
  BRL61_RS10325 (BRL61_10320) - 2003750..2004145 (+) 396 WP_000449655.1 hypothetical protein -
  BRL61_RS10330 (BRL61_10325) - 2004235..2004381 (+) 147 WP_074370993.1 hypothetical protein -
  BRL61_RS10335 (BRL61_10330) - 2004378..2004992 (-) 615 WP_000191466.1 hypothetical protein -
  BRL61_RS10340 (BRL61_10335) - 2005105..2006150 (+) 1046 Protein_1917 tyrosine-type recombinase/integrase -
  BRL61_RS10345 (BRL61_10340) yfkAB 2006195..2007340 (+) 1146 WP_053865706.1 radical SAM/CxCxxxxC motif protein YfkAB -
  BRL61_RS10350 (BRL61_10345) - 2007600..2008130 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=178730 BRL61_RS10315 WP_000094091.1 2002610..2003320(+) (irvR) [Staphylococcus aureus strain SJTUF_J27]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=178730 BRL61_RS10315 WP_000094091.1 2002610..2003320(+) (irvR) [Staphylococcus aureus strain SJTUF_J27]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373

Multiple sequence alignment