Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoP32a_RS00465 Genome accession   NZ_CP015348
Coordinates   85082..86782 (+) Length   566 a.a.
NCBI ID   WP_085426113.1    Uniprot ID   A0A2G5XBY1
Organism   Sporosarcina ureae strain P32a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80082..91782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP32a_RS00440 (SporoP32a_00440) - 80561..80803 (+) 243 WP_085426110.1 exodeoxyribonuclease VII small subunit -
  SporoP32a_RS00445 (SporoP32a_00445) - 80796..81680 (+) 885 WP_085426111.1 polyprenyl synthetase family protein -
  SporoP32a_RS00450 (SporoP32a_00450) dxs 81818..83716 (+) 1899 WP_085428933.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SporoP32a_RS00455 (SporoP32a_00455) - 83713..84537 (+) 825 WP_085426112.1 TlyA family RNA methyltransferase -
  SporoP32a_RS00460 (SporoP32a_00460) ahrC 84615..85064 (+) 450 WP_085428934.1 transcriptional regulator AhrC/ArgR -
  SporoP32a_RS00465 (SporoP32a_00465) recN 85082..86782 (+) 1701 WP_085426113.1 DNA repair protein RecN Machinery gene
  SporoP32a_RS00470 (SporoP32a_00470) - 86892..87845 (+) 954 WP_085426114.1 SpoIVB peptidase S55 domain-containing protein -
  SporoP32a_RS00475 (SporoP32a_00475) spo0A 88075..88869 (+) 795 WP_085426115.1 sporulation transcription factor Spo0A -
  SporoP32a_RS00480 (SporoP32a_00480) - 89669..91222 (+) 1554 WP_158232759.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64065.00 Da        Isoelectric Point: 4.8517

>NTDB_id=178673 SporoP32a_RS00465 WP_085426113.1 85082..86782(+) (recN) [Sporosarcina ureae strain P32a]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDQNIKAVSEK
LTEFGIDTEEGIVILRRDISASGKSACRVNGKLVTIAILREIGSLLIDIHGQHENQELMNEKRHIHLLDFFIGEPIERAM
STYTELYDKYKKLQQLIATKTQDEQQIAQKIDLYKFQLEEIDAANLIVGEEEALESERVKLQHFNRLFDRLNTSYEALSL
ESHGLDWVGNSMSDLEEAASIDEELKTISETVNSSFYALQDVSHDLKRMIDGMEFQPDRLEFVDDRLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYVEDLEIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIS
QKQPHQFDANGFDEVVFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKDVHDGRTTTAIHDVMQRERTEELSRMLSGAEITTLTLQHAEELLVLAEQR
KQEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=178673 SporoP32a_RS00465 WP_085426113.1 85082..86782(+) (recN) [Sporosarcina ureae strain P32a]
TTGTTAAGCGAACTTTCGATTAAAAACTTTGCTATTATTGAACAACTTGAAATCGCATTTGACGACGGATTAACGGTGTT
GACCGGTGAAACAGGTGCCGGGAAGTCAATTATCATCGATGCTGTCCAACTACTCGCTGGTGGCCGTGGATCACAAGAAT
TCATTCGTCATGGTGCAAAAAAAGCTGAGCTTCAAGGACTTTTCACTATCGATCAAAATATCAAAGCCGTGTCAGAGAAA
TTGACGGAATTTGGCATCGATACAGAAGAAGGTATTGTAATTTTACGTCGAGATATTAGTGCTAGCGGGAAATCCGCTTG
CCGTGTCAATGGTAAACTCGTAACGATTGCTATATTGCGTGAGATTGGTTCTTTGCTAATCGATATTCACGGACAGCATG
AAAATCAAGAATTGATGAATGAAAAGCGCCATATTCATTTGCTGGATTTCTTTATTGGTGAGCCAATTGAGCGAGCTATG
TCGACCTATACCGAACTTTATGATAAATATAAAAAACTTCAGCAACTTATTGCTACGAAAACGCAAGACGAACAACAAAT
CGCACAAAAAATTGATCTGTACAAGTTCCAATTGGAAGAAATCGACGCGGCTAATTTAATCGTCGGCGAAGAAGAAGCAC
TGGAGTCTGAACGTGTGAAGCTCCAGCACTTTAACCGTCTATTTGATCGCTTGAACACATCATATGAAGCATTATCGCTG
GAATCGCACGGTCTTGACTGGGTTGGTAATTCGATGAGTGATCTTGAAGAAGCTGCGTCAATTGATGAAGAGCTAAAAAC
TATATCTGAAACGGTCAATTCGTCATTTTATGCGCTACAAGATGTCTCGCATGATTTAAAACGAATGATTGATGGCATGG
AATTCCAGCCGGATCGATTGGAATTTGTCGATGATCGATTGGCATTATTTTTGACATTGAAGCGTAAATACGGCAAATCG
TTAGAAGATATTTTGATTTATCGCGATAAGATTGCTGATGCACTCGATCAACTTGTCAATCGTGACGAAAGATTGCATCA
AAATCAGGAATTGTTGGCACAATACGTAGAAGATCTCGAAATTGAAGCGAATGAATTATCTATTATTCGTAAAAAAGCGG
CGCTGTCTCTCGAAAAAGGGATTGAAGAGCAACTAAAACAATTATATATGGAAAAAGCGACATTCAAAGTACAAATTAGT
CAAAAACAGCCGCATCAATTTGACGCCAATGGATTTGACGAAGTGGTGTTTATGATTTCCACGAACTTGGGTGAACCACT
CAAACCGTTAGTACGAGTGGCGTCGGGTGGCGAATTATCTCGAATGATGTTAGCGTTAAAAACTATTTTTTCTCAACATC
AAGGTGTGACATCGATTATTTTCGATGAAGTGGATACGGGTGTGAGCGGACGTGTAGCACAATCCATTGCTGAAAAAATT
TCCATGATCTCTAGCCATTCACAAGTGTTATGTATTTCGCATTTACCACAAGTAGCTGCAATGGCCGATCATCACTATTT
GATTAAAAAAGATGTGCATGATGGTCGGACAACTACGGCAATTCATGATGTTATGCAAAGAGAACGTACGGAAGAATTAT
CGCGTATGCTTTCAGGTGCAGAAATTACGACTTTAACGCTTCAGCATGCAGAAGAATTATTAGTATTAGCTGAACAGCGC
AAACAGGAATTTCGTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5XBY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.787

100

0.535

Multiple sequence alignment