Detailed information NTG0178597

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A5479_RS07505
• Genome accession: NZ_CP015344
• Coordinates: 1666462..1667325 (+)
• Length: 287 a.a.
• NCBI ID: WP_027225017.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain D-7630
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1661462..1672325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A5479_RS07485 (A5479_07485)	-	1661955..1662281 (-)	327	WP_011213802.1	DUF1820 family protein	-
A5479_RS07490 (A5479_07490)	-	1662464..1663207 (-)	744	WP_014843846.1	methyltransferase domain-containing protein	-
A5479_RS07495 (A5479_07495)	pilB	1663466..1665190 (+)	1725	WP_014843847.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A5479_RS07500 (A5479_07500)	pilC	1665196..1666416 (+)	1221	WP_027225016.1	type II secretion system F family protein	Machinery gene
A5479_RS07505 (A5479_07505)	pilD	1666462..1667325 (+)	864	WP_027225017.1	prepilin peptidase	Machinery gene
A5479_RS07510 (A5479_07510)	-	1667339..1668544 (-)	1206	WP_014843849.1	cyclic nucleotide-binding domain-containing protein	-
A5479_RS07515 (A5479_07515)	-	1668652..1669245 (-)	594	WP_011213808.1	hypothetical protein	-
A5479_RS07520 (A5479_07520)	-	1669261..1669716 (-)	456	WP_011213809.1	hypothetical protein	-
A5479_RS07525 (A5479_07525)	-	1669850..1670665 (+)	816	WP_010947257.1	pyruvate, water dikinase regulatory protein	-
A5479_RS07530 (A5479_07530)	-	1670785..1672233 (-)	1449	WP_027225018.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32716.34 Da
• Isoelectric Point: 8.0726

>NTDB_id=178597 A5479_RS07505 WP_027225017.1 1666462..1667325(+) (pilD) [Legionella pneumophila strain D-7630]
MINALIINYPWFMYLVVGLFSLAVGSLLNVIIYRLPIILQEEWKEQCCELFQLEQRKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCDSPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSLTL
GLLWIGLIANTQNIFVSLGVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMYLPLILLISSITGA
IIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFWGDSIINWYIGYWM

Nucleotide

• Length: 864 bp

>NTDB_id=178597 A5479_RS07505 WP_027225017.1 1666462..1667325(+) (pilD) [Legionella pneumophila strain D-7630]
ATGATAAATGCACTAATAATCAATTATCCATGGTTTATGTATTTAGTCGTTGGACTCTTTTCTCTAGCTGTTGGAAGTTT
GCTTAATGTGATAATCTATCGCTTACCAATTATTTTGCAGGAAGAGTGGAAAGAGCAATGCTGTGAGCTATTCCAGCTTG
AACAGCGAAAAGAAAAAATAAAACTTAATTTATTTTTACCACGTTCTTTTTGCCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCTCTGTTAAGCTATATTTTGTTAAGAGGACGCTGTTACCAATGTGATAGTCCAATTTCAATTCGCTA
CCCTTTTGTTGAGACTCTGACCACAGTTTTATCCTTATACGCCAGTTGGCATTTTGGGTTTACAATACAACTATTATTTG
CTTTATTAGCTATCTGGATATTAATATCACTTGTTTTTATTGATCTTGATCATCAATTACTCCCTGATAGCCTCACTTTA
GGGCTTTTATGGATTGGCCTTATTGCTAATACCCAGAATATATTTGTTAGTCTTGGCGTTGCTGTATTAAGCTGTGCTGG
CGCCTATTTAGCCTTATGGTTATTCATTAATCTGTTTTATCTGATGACAGGTAAAGTAGGTATGGGACATGGGGATTTCA
AATTATTTGCAGCATTTGGTGCATGGCTTGGATGGATGTATTTACCATTAATTCTACTAATATCTTCAATAACCGGGGCT
ATCATTGGTTTGATTTATTTAAAGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGCCCTTTTCTTTGCATTTC
TGGATTAATAGCTATGTTTTGGGGAGACTCAATTATCAATTGGTATATAGGTTATTGGATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.11	97.909	0.481
pilD	Acinetobacter nosocomialis M2	48.352	95.122	0.46
pilD	Acinetobacter baumannii D1279779	47.636	95.819	0.456
pilD	Vibrio campbellii strain DS40M4	45.683	96.864	0.443
pilD	Neisseria gonorrhoeae MS11	42.806	96.864	0.415