Detailed information
Bioinformatically predicted
Overview
| Name | lpp1978 | Type | Machinery gene |
| Locus tag | A5478_RS09985 | Genome accession | NZ_CP015342 |
| Coordinates | 2236556..2236870 (-) | Length | 104 a.a. |
| NCBI ID | WP_027224483.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain D-7632 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2231556..2241870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5478_RS09960 (A5478_09960) | - | 2231982..2232482 (-) | 501 | WP_014844283.1 | hypothetical protein | - |
| A5478_RS09965 (A5478_09965) | - | 2232974..2233834 (+) | 861 | WP_014844284.1 | polysaccharide deacetylase family protein | - |
| A5478_RS09970 (A5478_09970) | - | 2233951..2235147 (-) | 1197 | WP_027224485.1 | murein transglycosylase A | - |
| A5478_RS09975 (A5478_09975) | lpp1976 | 2235257..2235814 (-) | 558 | WP_027224484.1 | hypothetical protein | Machinery gene |
| A5478_RS09980 (A5478_09980) | lpp1977 | 2235811..2236617 (-) | 807 | WP_050598156.1 | PilW family protein | Machinery gene |
| A5478_RS09985 (A5478_09985) | lpp1978 | 2236556..2236870 (-) | 315 | WP_027224483.1 | type IV pilus modification PilV family protein | Machinery gene |
| A5478_RS09990 (A5478_09990) | hisC | 2237030..2238139 (+) | 1110 | WP_014844289.1 | histidinol-phosphate transaminase | - |
| A5478_RS09995 (A5478_09995) | - | 2238176..2238517 (+) | 342 | WP_010947715.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| A5478_RS10000 (A5478_10000) | secF | 2238706..2239623 (-) | 918 | WP_010947716.1 | protein translocase subunit SecF | - |
| A5478_RS10005 (A5478_10005) | secD | 2239636..2241492 (-) | 1857 | WP_011214250.1 | protein translocase subunit SecD | - |
| A5478_RS10010 (A5478_10010) | yajC | 2241514..2241849 (-) | 336 | WP_010947718.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 12263.42 Da Isoelectric Point: 10.0591
>NTDB_id=178525 A5478_RS09985 WP_027224483.1 2236556..2236870(-) (lpp1978) [Legionella pneumophila strain D-7632]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN
Nucleotide
Download Length: 315 bp
>NTDB_id=178525 A5478_RS09985 WP_027224483.1 2236556..2236870(-) (lpp1978) [Legionella pneumophila strain D-7632]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lpp1978 | Legionella pneumophila strain ERS1305867 |
99.038 |
100 |
0.99 |
| lpp1978 | Legionella pneumophila str. Paris |
97.115 |
100 |
0.971 |