Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BVL39_RS07430 Genome accession   NZ_CP019051
Coordinates   1488022..1488690 (+) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli strain CRE1540     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1483022..1493690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL39_RS07395 (BVL39_07485) yicC 1483041..1483904 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  BVL39_RS07405 (BVL39_07495) rph 1484031..1484747 (+) 717 WP_001247093.1 ribonuclease PH -
  BVL39_RS07410 (BVL39_07500) pyrE 1484813..1485454 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  BVL39_RS07415 (BVL39_07505) slmA 1485491..1486087 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BVL39_RS07420 (BVL39_07510) dut 1486194..1486652 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BVL39_RS07425 (BVL39_07515) coaBC 1486630..1487850 (-) 1221 WP_000050152.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BVL39_RS07430 (BVL39_07520) radC 1488022..1488690 (+) 669 WP_001352775.1 RadC family protein Machinery gene
  BVL39_RS07435 (BVL39_07525) rpmB 1488907..1489143 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BVL39_RS07440 (BVL39_07530) rpmG 1489164..1489331 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BVL39_RS07445 (BVL39_07535) mutM 1489429..1490238 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BVL39_RS07450 (BVL39_07540) coaD 1490277..1490756 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BVL39_RS07455 (BVL39_07545) waaA 1490764..1492041 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BVL39_RS07460 (BVL39_07550) rfaQ 1492454..1493512 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=178445 BVL39_RS07430 WP_001352775.1 1488022..1488690(+) (radC) [Escherichia coli strain CRE1540]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=178445 BVL39_RS07430 WP_001352775.1 1488022..1488690(+) (radC) [Escherichia coli strain CRE1540]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment