Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BE930_RS25810 Genome accession   NZ_CP019029
Coordinates   4561845..4562582 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ecol_881     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4556845..4567582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE930_RS25785 (BE930_26365) tyrA 4557219..4558340 (+) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BE930_RS25790 (BE930_26370) pheA 4558383..4559543 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  BE930_RS29620 pheL 4559642..4559689 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BE930_RS25795 (BE930_26375) raiA 4559793..4560134 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BE930_RS25805 (BE930_26385) - 4560395..4561741 (-) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  BE930_RS25810 (BE930_26390) comL 4561845..4562582 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BE930_RS25815 (BE930_26395) rluD 4562717..4563697 (+) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BE930_RS25820 (BE930_26400) yfiH 4563694..4564425 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  BE930_RS25825 (BE930_26405) clpC 4564555..4567128 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=178330 BE930_RS25810 WP_000197686.1 4561845..4562582(-) (comL) [Escherichia coli strain Ecol_881]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=178330 BE930_RS25810 WP_000197686.1 4561845..4562582(-) (comL) [Escherichia coli strain Ecol_881]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376