Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   V471_RS04925 Genome accession   NZ_CP015283
Coordinates   943257..945071 (+) Length   604 a.a.
NCBI ID   WP_084871161.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 938257..950071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS04905 (V471_04840) gdhA 938882..940234 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  V471_RS04910 (V471_04845) - 940515..942056 (+) 1542 WP_232326839.1 YfhO family protein -
  V471_RS04915 (V471_04850) - 942214..942624 (+) 411 WP_014633541.1 peptide deformylase -
  V471_RS04920 (V471_04855) rcrR 942810..943253 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V471_RS04925 (V471_04860) rcrP 943257..945071 (+) 1815 WP_084871161.1 ABC transporter ATP-binding protein Regulator
  V471_RS04930 (V471_04865) rcrQ 945061..946839 (+) 1779 WP_049529161.1 ABC transporter ATP-binding protein Regulator
  V471_RS04935 (V471_04870) - 946947..947570 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -
  V471_RS04940 (V471_04875) - 947718..948341 (+) 624 WP_049529160.1 GTP pyrophosphokinase family protein -
  V471_RS04945 (V471_04880) - 948343..949020 (+) 678 WP_084871162.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 604 a.a.        Molecular weight: 67030.81 Da        Isoelectric Point: 6.5195

>NTDB_id=178301 V471_RS04925 WP_084871161.1 943257..945071(+) (rcrP) [Streptococcus salivarius strain ATCC 25975]
MFKIFKRLTTKELIMIVLVVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSLALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKIHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSKKPKEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=178301 V471_RS04925 WP_084871161.1 943257..945071(+) (rcrP) [Streptococcus salivarius strain ATCC 25975]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGTGGTGATTTTTGTTTGCTTGAACGT
CTATTTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCTTCTGTAGTTGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCTGAGATTAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGCTGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AACTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACTGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTGGCCTTACTGACACCGGTAATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCACA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGATCCATCTTTTCTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTATCCTGAAAATAGTTCTAA
AAAACCTAAAGAAGTGGGTACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACAATCAAGGTTGACGGAGTAGATGTGCGACATTACGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCCCTTGATGATGCTAAGATTTGGGAAGCCCTTGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCCCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTGACCAAGGTAAGGTCGTTGGTCAAGGGACTCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.43

100

0.685


Multiple sequence alignment