Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V471_RS00735 Genome accession   NZ_CP015283
Coordinates   148870..149904 (-) Length   344 a.a.
NCBI ID   WP_415244984.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 143870..154904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS00710 (V471_00715) ilvD 144141..145859 (-) 1719 WP_170314552.1 dihydroxy-acid dehydratase -
  V471_RS00715 (V471_00720) - 145972..147147 (+) 1176 WP_084870998.1 NAD(P)/FAD-dependent oxidoreductase -
  V471_RS00725 (V471_00730) trmB 147370..148011 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V471_RS00730 (V471_00735) ccrZ 148021..148812 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V471_RS00735 (V471_00740) pptB 148870..149904 (-) 1035 WP_415244984.1 ABC transporter permease Regulator
  V471_RS00740 (V471_00745) pptA 149904..150635 (-) 732 WP_014632700.1 ABC transporter ATP-binding protein Regulator
  V471_RS00745 (V471_00750) - 150700..151119 (+) 420 WP_014632699.1 HIT family protein -
  V471_RS00750 (V471_00755) - 151116..151415 (+) 300 WP_084871000.1 hypothetical protein -
  V471_RS00755 (V471_00760) - 151467..152195 (-) 729 WP_084871001.1 hypothetical protein -
  V471_RS00760 (V471_00765) - 152213..152848 (-) 636 WP_084871002.1 DUF4230 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39948.43 Da        Isoelectric Point: 10.5703

>NTDB_id=178262 V471_RS00735 WP_415244984.1 148870..149904(-) (pptB) [Streptococcus salivarius strain ATCC 25975]
MAKLFMERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLGMTLVQAVCLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=178262 V471_RS00735 WP_415244984.1 148870..149904(-) (pptB) [Streptococcus salivarius strain ATCC 25975]
ATAGCTAAGCTATTTATGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGTTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAACCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTACCTAAGGGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTAACG
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTACCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAATTTAGC
CTGATTTTGGTTGGAATGATGCTAGTTTTGAGCCTTGTTTACCTACCAGCTAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.093

100

0.971
  pptB Streptococcus thermophilus LMD-9

93.023

100

0.93

Multiple sequence alignment