Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NX99_RS08195 Genome accession   NZ_CP015282
Coordinates   1760281..1760799 (+) Length   172 a.a.
NCBI ID   WP_002884367.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1755281..1765799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS08180 (NX99_08035) mutY 1756486..1757637 (-) 1152 WP_084915289.1 A/G-specific adenine glycosylase -
  NX99_RS08185 (NX99_08040) - 1758805..1759758 (-) 954 WP_084915291.1 hypothetical protein -
  NX99_RS08190 (NX99_08045) rpsF 1759979..1760269 (+) 291 WP_002884188.1 30S ribosomal protein S6 -
  NX99_RS08195 (NX99_08050) ssb 1760281..1760799 (+) 519 WP_002884367.1 single-stranded DNA-binding protein Machinery gene
  NX99_RS08200 (NX99_08055) rpsR 1760841..1761080 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  NX99_RS08205 (NX99_08060) - 1761202..1762083 (-) 882 WP_022495971.1 DUF4300 family protein -
  NX99_RS08210 (NX99_08065) - 1762200..1762871 (-) 672 WP_002884401.1 DUF1129 domain-containing protein -
  NX99_RS08215 (NX99_08070) - 1762941..1763885 (-) 945 WP_002884446.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18624.35 Da        Isoelectric Point: 4.9163

>NTDB_id=178243 NX99_RS08195 WP_002884367.1 1760281..1760799(+) (ssb) [Streptococcus salivarius strain ATCC 27945]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPTQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=178243 NX99_RS08195 WP_002884367.1 1760281..1760799(+) (ssb) [Streptococcus salivarius strain ATCC 27945]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTACGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587

Multiple sequence alignment