Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NX99_RS07470 Genome accession   NZ_CP015282
Coordinates   1620343..1621053 (-) Length   236 a.a.
NCBI ID   WP_084915225.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615343..1626053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS07435 (NX99_07300) rplQ 1615448..1615834 (+) 387 WP_002885709.1 50S ribosomal protein L17 -
  NX99_RS07440 (NX99_07305) - 1616084..1617379 (+) 1296 WP_084915220.1 gamma-glutamylcysteine synthetase -
  NX99_RS07450 (NX99_07315) - 1617803..1618684 (+) 882 WP_002885816.1 class II fructose-bisphosphate aldolase -
  NX99_RS07455 (NX99_07320) - 1618986..1619342 (+) 357 WP_002892073.1 hypothetical protein -
  NX99_RS07460 - 1619375..1619713 (+) 339 WP_084915221.1 hypothetical protein -
  NX99_RS07465 (NX99_07325) - 1619729..1620289 (+) 561 WP_084915223.1 TIGR01440 family protein -
  NX99_RS07470 (NX99_07330) treR 1620343..1621053 (-) 711 WP_084915225.1 trehalose operon repressor Regulator
  NX99_RS07475 (NX99_07335) treP 1621210..1623189 (+) 1980 WP_084915227.1 PTS system trehalose-specific EIIBC component -
  NX99_RS07480 (NX99_07340) treC 1623253..1624878 (+) 1626 WP_084915229.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27332.06 Da        Isoelectric Point: 7.4274

>NTDB_id=178232 NX99_RS07470 WP_084915225.1 1620343..1621053(-) (treR) [Streptococcus salivarius strain ATCC 27945]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=178232 NX99_RS07470 WP_084915225.1 1620343..1621053(-) (treR) [Streptococcus salivarius strain ATCC 27945]
ATGAAAAAATACCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGATCAAAAATATCAAGTAGGAGACTTTCTCCC
GACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCCCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGGTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATGCTAGCCTTGTCCCTCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCGTCATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.593

100

0.606

Multiple sequence alignment