Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BTI679_RS21855 Genome accession   NZ_CP015257
Coordinates   4211814..4213553 (-) Length   579 a.a.
NCBI ID   WP_098111434.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain Bt18679     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4206814..4218553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS21835 (BTI679_44300) - 4207170..4207316 (+) 147 WP_001247671.1 YycC family protein -
  BTI679_RS21840 (BTI679_44310) - 4207506..4209029 (-) 1524 WP_064474831.1 glycosyltransferase family 39 protein -
  BTI679_RS21845 (BTI679_44320) spo0A 4209315..4210109 (-) 795 WP_033656399.1 sporulation transcription factor Spo0A Regulator
  BTI679_RS21850 (BTI679_44330) spoIVB 4210397..4211695 (-) 1299 WP_002096319.1 SpoIVB peptidase -
  BTI679_RS21855 (BTI679_44340) recN 4211814..4213553 (-) 1740 WP_098111434.1 DNA repair protein RecN Machinery gene
  BTI679_RS21860 (BTI679_44350) argR 4213821..4214270 (-) 450 WP_001032581.1 arginine repressor ArgR -
  BTI679_RS21865 (BTI679_44360) - 4214413..4215252 (-) 840 WP_001274751.1 TlyA family RNA methyltransferase -
  BTI679_RS21870 (BTI679_44370) dxs 4215256..4217148 (-) 1893 WP_064474829.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BTI679_RS21875 (BTI679_44380) ispA 4217451..4218341 (-) 891 WP_064474828.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65685.73 Da        Isoelectric Point: 4.7891

>NTDB_id=178130 BTI679_RS21855 WP_098111434.1 4211814..4213553(-) (recN) [Bacillus wiedmannii strain Bt18679]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNIRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=178130 BTI679_RS21855 WP_098111434.1 4211814..4213553(-) (recN) [Bacillus wiedmannii strain Bt18679]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGGGGTCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAATGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTCACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAGGCGGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCATTAAGCGCT
GACGGACAAGGTTTAGATAATATAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCGTATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTCCTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTTAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTTGAGGGTGCCCCGGTAAGGCTTACAGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment