Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6B45_RS09640 Genome accession   NZ_CP015247
Coordinates   1925460..1926026 (-) Length   188 a.a.
NCBI ID   WP_002815494.1    Uniprot ID   A0A223XQS1
Organism   Leuconostoc suionicum strain DSM 20241     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1920460..1931026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B45_RS09620 (A6B45_09490) dnaB 1921011..1922474 (-) 1464 WP_072614362.1 replicative DNA helicase -
  A6B45_RS09625 (A6B45_09495) rplI 1922476..1922928 (-) 453 WP_042251058.1 50S ribosomal protein L9 -
  A6B45_RS09630 (A6B45_09500) - 1922946..1924973 (-) 2028 WP_072614363.1 DHH family phosphoesterase -
  A6B45_RS09635 (A6B45_09505) rpsR 1925144..1925428 (-) 285 WP_004911134.1 30S ribosomal protein S18 -
  A6B45_RS09640 (A6B45_09510) ssb 1925460..1926026 (-) 567 WP_002815494.1 single-stranded DNA-binding protein Machinery gene
  A6B45_RS09645 (A6B45_09515) rpsF 1926060..1926356 (-) 297 WP_011680503.1 30S ribosomal protein S6 -
  A6B45_RS09650 (A6B45_09520) pepV 1926614..1928050 (-) 1437 WP_072614521.1 dipeptidase PepV -
  A6B45_RS09655 (A6B45_09525) - 1928047..1928874 (-) 828 WP_072614364.1 energy-coupling factor transporter transmembrane component T family protein -
  A6B45_RS09660 (A6B45_09530) - 1928876..1930552 (-) 1677 WP_072614365.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20159.69 Da        Isoelectric Point: 4.5478

>NTDB_id=178029 A6B45_RS09640 WP_002815494.1 1925460..1926026(-) (ssb) [Leuconostoc suionicum strain DSM 20241]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=178029 A6B45_RS09640 WP_002815494.1 1925460..1926026(-) (ssb) [Leuconostoc suionicum strain DSM 20241]
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAGGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCTGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTCGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGATAACTCATTTAACGGTGTTGATCCTTTTGCAAGTGCGAGCTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223XQS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.766

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.596

100

0.516

Multiple sequence alignment