Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   A4265_RS01425 Genome accession   NZ_CP015238
Coordinates   275369..276439 (+) Length   356 a.a.
NCBI ID   WP_063631748.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NS53     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270369..281439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4265_RS01410 (A4265_01290) amiA 270897..272867 (+) 1971 WP_063631747.1 peptide ABC transporter substrate-binding protein Regulator
  A4265_RS01415 (A4265_01295) amiC 272932..274434 (+) 1503 WP_032464172.1 ABC transporter permease Regulator
  A4265_RS01420 (A4265_01300) amiD 274434..275360 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  A4265_RS01425 (A4265_01305) amiE 275369..276439 (+) 1071 WP_063631748.1 ABC transporter ATP-binding protein Regulator
  A4265_RS01430 (A4265_01310) amiF 276432..277355 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  A4265_RS09400 (A4265_08530) - 277393..277476 (-) 84 Protein_259 IS3 family transposase -
  A4265_RS09405 - 277610..277899 (-) 290 Protein_260 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39659.76 Da        Isoelectric Point: 5.8952

>NTDB_id=177888 A4265_RS01425 WP_063631748.1 275369..276439(+) (amiE) [Streptococcus pyogenes strain NS53]
MTKENNVILTAKDVVVEFDVRARVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=177888 A4265_RS01425 WP_063631748.1 275369..276439(+) (amiE) [Streptococcus pyogenes strain NS53]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGCTCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.973

94.663

0.539

Multiple sequence alignment