Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE948_RS20530 Genome accession   NZ_CP019005
Coordinates   3449663..3450139 (+) Length   158 a.a.
NCBI ID   WP_001186711.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3444663..3455139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE948_RS20500 (BE948_21035) - 3444785..3447631 (+) 2847 WP_046464191.1 Ag43/Cah family autotransporter adhesin -
  BE948_RS20505 (BE948_21040) - 3447702..3447897 (+) 196 Protein_3294 DUF905 family protein -
  BE948_RS20515 (BE948_21050) - 3448015..3448833 (+) 819 WP_046464190.1 DUF932 domain-containing protein -
  BE948_RS20525 (BE948_21060) - 3449175..3449648 (+) 474 WP_000855059.1 antirestriction protein -
  BE948_RS20530 (BE948_21065) radC 3449663..3450139 (+) 477 WP_001186711.1 RadC family protein Machinery gene
  BE948_RS20535 (BE948_21070) - 3450202..3450423 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE948_RS20545 (BE948_21080) - 3450586..3450954 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE948_RS20550 (BE948_21085) - 3451044..3451421 (+) 378 WP_000854761.1 TA system toxin CbtA family protein -
  BE948_RS20555 (BE948_21090) - 3451418..3451566 (+) 149 Protein_3301 DUF5983 family protein -
  BE948_RS27160 (BE948_21095) - 3451666..3451746 (+) 81 Protein_3302 hypothetical protein -
  BE948_RS20560 (BE948_21100) - 3452177..3453716 (-) 1540 Protein_3303 IS66-like element ISEc22 family transposase -
  BE948_RS20565 (BE948_21105) tnpB 3453765..3454112 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  BE948_RS20570 (BE948_21110) - 3454109..3454513 (-) 405 WP_000839179.1 transposase -
  BE948_RS28215 - 3454594..3454818 (+) 225 Protein_3306 transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=177887 BE948_RS20530 WP_001186711.1 3449663..3450139(+) (radC) [Escherichia coli strain Ecol_AZ155]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=177887 BE948_RS20530 WP_001186711.1 3449663..3450139(+) (radC) [Escherichia coli strain Ecol_AZ155]
ATGCAGCAGCTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment