Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BE940_RS11975 Genome accession   NZ_CP019000
Coordinates   1915821..1916558 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ecol_AZ153     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910821..1921558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE940_RS11960 (BE940_12130) clpC 1911275..1913848 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BE940_RS11965 (BE940_12135) yfiH 1913978..1914709 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  BE940_RS11970 (BE940_12140) rluD 1914706..1915686 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BE940_RS11975 (BE940_12145) comL 1915821..1916558 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BE940_RS11985 (BE940_12155) raiA 1916828..1917169 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BE940_RS27955 pheL 1917273..1917320 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BE940_RS11990 (BE940_12160) pheA 1917419..1918579 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  BE940_RS11995 (BE940_12165) tyrA 1918622..1919743 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BE940_RS12000 (BE940_12170) aroF 1919754..1920824 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BE940_RS12005 (BE940_12175) yfiL 1921034..1921399 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=177768 BE940_RS11975 WP_000197686.1 1915821..1916558(+) (comL) [Escherichia coli strain Ecol_AZ153]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=177768 BE940_RS11975 WP_000197686.1 1915821..1916558(+) (comL) [Escherichia coli strain Ecol_AZ153]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376