Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A2J09_RS18810 Genome accession   NZ_CP015224
Coordinates   3823203..3823772 (-) Length   189 a.a.
NCBI ID   WP_008177953.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain 2362     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3818203..3828772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2J09_RS18790 (A2J09_18785) rplI 3819328..3819774 (-) 447 WP_012296208.1 50S ribosomal protein L9 -
  A2J09_RS18795 (A2J09_18790) - 3819774..3821744 (-) 1971 WP_036162492.1 DHH family phosphoesterase -
  A2J09_RS18800 (A2J09_18795) - 3821758..3822699 (-) 942 WP_012296210.1 YybS family protein -
  A2J09_RS18805 (A2J09_18800) rpsR 3822925..3823161 (-) 237 WP_012296211.1 30S ribosomal protein S18 -
  A2J09_RS18810 (A2J09_18805) ssbA 3823203..3823772 (-) 570 WP_008177953.1 single-stranded DNA-binding protein Machinery gene
  A2J09_RS18815 (A2J09_18810) rpsF 3823820..3824107 (-) 288 WP_031415833.1 30S ribosomal protein S6 -
  A2J09_RS18820 (A2J09_18815) - 3824286..3824852 (+) 567 WP_012296213.1 DUF3267 domain-containing protein -
  A2J09_RS18825 (A2J09_18820) - 3824916..3825956 (-) 1041 WP_012296214.1 acyl-CoA dehydrogenase -
  A2J09_RS18830 (A2J09_18825) ychF 3826039..3827139 (-) 1101 WP_012296215.1 redox-regulated ATPase YchF -
  A2J09_RS18835 (A2J09_18830) - 3827236..3827436 (-) 201 WP_012296216.1 DUF951 domain-containing protein -
  A2J09_RS18840 (A2J09_18835) - 3827438..3828310 (-) 873 WP_031415837.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20589.58 Da        Isoelectric Point: 4.7719

>NTDB_id=177722 A2J09_RS18810 WP_008177953.1 3823203..3823772(-) (ssbA) [Lysinibacillus sphaericus strain 2362]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=177722 A2J09_RS18810 WP_008177953.1 3823203..3823772(-) (ssbA) [Lysinibacillus sphaericus strain 2362]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCCTATGGCGGTGGTCAAC
CACAGCAGCAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGACCCATTTGCTAATAGCAAGGGACCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487

Multiple sequence alignment