Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | A2J09_RS10650 | Genome accession | NZ_CP015224 |
| Coordinates | 2188926..2189258 (-) | Length | 110 a.a. |
| NCBI ID | WP_012295159.1 | Uniprot ID | - |
| Organism | Lysinibacillus sphaericus strain 2362 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2183926..2194258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2J09_RS10615 (A2J09_10610) | gcvPA | 2184063..2185409 (-) | 1347 | WP_012295153.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| A2J09_RS10620 (A2J09_10615) | gcvT | 2185435..2186538 (-) | 1104 | WP_012295154.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| A2J09_RS10625 (A2J09_10620) | - | 2187041..2187556 (-) | 516 | WP_031416947.1 | shikimate kinase | - |
| A2J09_RS10635 (A2J09_10630) | comGF | 2187755..2188183 (-) | 429 | WP_012295156.1 | competence type IV pilus minor pilin ComGF | - |
| A2J09_RS10640 (A2J09_10635) | - | 2188176..2188493 (-) | 318 | WP_012295157.1 | hypothetical protein | - |
| A2J09_RS10645 (A2J09_10640) | comGD | 2188486..2188926 (-) | 441 | WP_012295158.1 | competence type IV pilus minor pilin ComGD | - |
| A2J09_RS10650 (A2J09_10645) | comGC | 2188926..2189258 (-) | 333 | WP_012295159.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A2J09_RS10655 (A2J09_10650) | comGB | 2189269..2190342 (-) | 1074 | WP_012295160.1 | competence type IV pilus assembly protein ComGB | - |
| A2J09_RS10660 (A2J09_10655) | comGA | 2190317..2191336 (-) | 1020 | WP_012295161.1 | competence type IV pilus ATPase ComGA | - |
| A2J09_RS10665 (A2J09_10660) | - | 2191665..2192375 (+) | 711 | WP_012295162.1 | helix-turn-helix transcriptional regulator | - |
| A2J09_RS10670 (A2J09_10665) | - | 2192493..2192735 (+) | 243 | WP_004231035.1 | DUF2626 family protein | - |
| A2J09_RS10675 (A2J09_10670) | - | 2192795..2193439 (-) | 645 | WP_012295163.1 | MBL fold metallo-hydrolase | - |
| A2J09_RS10680 (A2J09_10675) | - | 2193608..2193787 (+) | 180 | WP_031416957.1 | DUF2759 domain-containing protein | - |
Sequence
Protein
Download Length: 110 a.a. Molecular weight: 12302.40 Da Isoelectric Point: 4.6258
>NTDB_id=177708 A2J09_RS10650 WP_012295159.1 2188926..2189258(-) (comGC) [Lysinibacillus sphaericus strain 2362]
MKQIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMTFPTLEDLVKEGYLKE
NETTCPNKEEIVITIKGEVRLANADAGTQG
MKQIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMTFPTLEDLVKEGYLKE
NETTCPNKEEIVITIKGEVRLANADAGTQG
Nucleotide
Download Length: 333 bp
>NTDB_id=177708 A2J09_RS10650 WP_012295159.1 2188926..2189258(-) (comGC) [Lysinibacillus sphaericus strain 2362]
ATGAAACAAATCAAACAACAAAATGGCTTTACTTTAATCGAAATGCTGATTGTTTTGTTAATTATATCAATCCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCGGCCTATATTAATATGGTGCAGG
GGCAAGTAGAGGCCTATAGAGTGGATTTTATGACATTTCCGACCCTTGAGGATTTAGTGAAGGAGGGCTATTTGAAAGAA
AATGAAACAACTTGCCCTAATAAAGAAGAAATAGTCATTACGATTAAAGGAGAGGTACGCTTAGCAAATGCTGATGCAGG
TACTCAAGGATAA
ATGAAACAAATCAAACAACAAAATGGCTTTACTTTAATCGAAATGCTGATTGTTTTGTTAATTATATCAATCCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCGGCCTATATTAATATGGTGCAGG
GGCAAGTAGAGGCCTATAGAGTGGATTTTATGACATTTCCGACCCTTGAGGATTTAGTGAAGGAGGGCTATTTGAAAGAA
AATGAAACAACTTGCCCTAATAAAGAAGAAATAGTCATTACGATTAAAGGAGAGGTACGCTTAGCAAATGCTGATGCAGG
TACTCAAGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
54.082 |
89.091 |
0.482 |
| comGC | Staphylococcus aureus MW2 |
45.263 |
86.364 |
0.391 |
| comGC | Staphylococcus aureus N315 |
45.263 |
86.364 |
0.391 |