Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BE966_RS25265 | Genome accession | NZ_CP018970 |
| Coordinates | 4597600..4598076 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain Ecol_542 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4592600..4603076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE966_RS25235 (BE966_25865) | cah | 4592721..4595567 (+) | 2847 | WP_021526504.1 | calcium-binding autotransporter Cah | - |
| BE966_RS25240 (BE966_25870) | - | 4595638..4595833 (+) | 196 | Protein_4518 | DUF905 family protein | - |
| BE966_RS25250 (BE966_25880) | - | 4595951..4596769 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| BE966_RS25260 (BE966_25890) | - | 4597111..4597584 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| BE966_RS25265 (BE966_25895) | radC | 4597600..4598076 (+) | 477 | WP_001186775.1 | RadC family protein | Machinery gene |
| BE966_RS25270 (BE966_25900) | - | 4598139..4598360 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| BE966_RS25280 (BE966_25910) | - | 4598523..4598891 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BE966_RS25285 (BE966_25915) | - | 4598981..4599358 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| BE966_RS25290 (BE966_25920) | - | 4599355..4599843 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| BE966_RS25295 (BE966_25925) | - | 4599860..4600036 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| BE966_RS28990 | - | 4600142..4600291 (+) | 150 | Protein_4527 | hypothetical protein | - |
| BE966_RS30010 | - | 4600261..4600395 (+) | 135 | Protein_4528 | transcriptional regulator | - |
| BE966_RS29885 (BE966_25930) | - | 4600658..4600963 (+) | 306 | Protein_4529 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=177322 BE966_RS25265 WP_001186775.1 4597600..4598076(+) (radC) [Escherichia coli strain Ecol_542]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=177322 BE966_RS25265 WP_001186775.1 4597600..4598076(+) (radC) [Escherichia coli strain Ecol_542]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |