Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BE959_RS14755 Genome accession   NZ_CP018965
Coordinates   2639841..2640578 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ecol_517     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2634841..2645578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE959_RS14725 (BE959_15115) yfiL 2634999..2635364 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  BE959_RS14730 (BE959_15120) aroF 2635574..2636644 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BE959_RS14735 (BE959_15125) tyrA 2636655..2637776 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BE959_RS14740 (BE959_15130) pheA 2637819..2638979 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  BE959_RS26125 pheL 2639078..2639125 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  BE959_RS14745 (BE959_15135) raiA 2639229..2639570 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BE959_RS14755 (BE959_15145) comL 2639841..2640578 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BE959_RS14760 (BE959_15150) rluD 2640713..2641693 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BE959_RS14765 (BE959_15155) yfiH 2641690..2642421 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  BE959_RS14770 (BE959_15160) clpC 2642551..2645124 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=177220 BE959_RS14755 WP_000197686.1 2639841..2640578(-) (comL) [Escherichia coli strain Ecol_517]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=177220 BE959_RS14755 WP_000197686.1 2639841..2640578(-) (comL) [Escherichia coli strain Ecol_517]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376