Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BE963_RS28190 Genome accession   NZ_CP018957
Coordinates   5036143..5036880 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ecol_316     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5031143..5041880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE963_RS28175 (BE963_28785) clpC 5031597..5034170 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BE963_RS28180 (BE963_28790) yfiH 5034300..5035031 (-) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  BE963_RS28185 (BE963_28795) rluD 5035028..5036008 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BE963_RS28190 (BE963_28800) comL 5036143..5036880 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BE963_RS28200 (BE963_28810) raiA 5037150..5037491 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BE963_RS28915 pheL 5037595..5037642 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BE963_RS28205 (BE963_28815) pheA 5037742..5038902 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  BE963_RS28210 (BE963_28820) tyrA 5038945..5040066 (-) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BE963_RS28215 (BE963_28825) aroF 5040077..5041147 (-) 1071 WP_001168050.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BE963_RS28220 (BE963_28830) yfiL 5041356..5041721 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=177166 BE963_RS28190 WP_000197686.1 5036143..5036880(+) (comL) [Escherichia coli strain Ecol_316]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=177166 BE963_RS28190 WP_000197686.1 5036143..5036880(+) (comL) [Escherichia coli strain Ecol_316]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376