Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IEC338SC_RS10555 Genome accession   NZ_CP015145
Coordinates   2241594..2241974 (+) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain IEC338SC     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2236594..2246974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS10525 (IEC338SC_2114) kdsB 2237500..2238261 (+) 762 WP_063098716.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IEC338SC_RS10530 (IEC338SC_2115) holB 2238275..2239255 (+) 981 WP_063098717.1 DNA polymerase III subunit delta' -
  IEC338SC_RS10535 (IEC338SC_2116) pilZ 2239266..2239607 (+) 342 WP_002121335.1 PilZ domain-containing protein -
  IEC338SC_RS10540 (IEC338SC_2117) ycfH 2239625..2240398 (+) 774 WP_044100051.1 TatD family hydrolase -
  IEC338SC_RS10545 (IEC338SC_2118) - 2240435..2241043 (+) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  IEC338SC_RS10550 (IEC338SC_2119) - 2241050..2241604 (+) 555 WP_002121405.1 type II secretion system protein -
  IEC338SC_RS10555 (IEC338SC_2120) xcpV 2241594..2241974 (+) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  IEC338SC_RS10560 (IEC338SC_2121) xcpW 2241974..2242789 (+) 816 WP_063098718.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IEC338SC_RS10565 (IEC338SC_2122) gspK 2242790..2243749 (+) 960 WP_039761082.1 type II secretion system minor pseudopilin GspK -
  IEC338SC_RS10570 (IEC338SC_2123) - 2243977..2244573 (+) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  IEC338SC_RS10575 (IEC338SC_2124) ung 2244627..2245340 (+) 714 WP_005069527.1 uracil-DNA glycosylase -
  IEC338SC_RS10580 (IEC338SC_2125) hibch 2245337..2246461 (+) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  IEC338SC_RS10585 (IEC338SC_2126) tadA 2246467..2246970 (+) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=177111 IEC338SC_RS10555 WP_002121425.1 2241594..2241974(+) (xcpV) [Acinetobacter pittii strain IEC338SC]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=177111 IEC338SC_RS10555 WP_002121425.1 2241594..2241974(+) (xcpV) [Acinetobacter pittii strain IEC338SC]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937

Multiple sequence alignment