Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IEC338SC_RS01985 Genome accession   NZ_CP015145
Coordinates   420437..421066 (-) Length   209 a.a.
NCBI ID   WP_063097825.1    Uniprot ID   A0AB33BHV0
Organism   Acinetobacter pittii strain IEC338SC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415437..426066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS01950 (IEC338SC_0392) mlaE 415770..416546 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IEC338SC_RS01955 (IEC338SC_0393) - 416546..417226 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IEC338SC_RS01960 (IEC338SC_0394) - 417253..417894 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  IEC338SC_RS01965 (IEC338SC_0395) - 417906..418193 (+) 288 WP_005078357.1 STAS domain-containing protein -
  IEC338SC_RS01970 (IEC338SC_0396) - 418266..419279 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  IEC338SC_RS01975 (IEC338SC_0397) - 419438..420019 (+) 582 WP_063097824.1 TIGR00730 family Rossman fold protein -
  IEC338SC_RS01980 (IEC338SC_0398) mutT 420034..420435 (+) 402 WP_014207760.1 NUDIX hydrolase -
  IEC338SC_RS01985 (IEC338SC_0399) comF 420437..421066 (-) 630 WP_063097825.1 ComF family protein Machinery gene
  IEC338SC_RS01990 (IEC338SC_0400) recG 421059..423104 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  IEC338SC_RS01995 (IEC338SC_0401) - 423125..423940 (+) 816 WP_063097826.1 NAD-dependent epimerase/dehydratase family protein -
  IEC338SC_RS02000 (IEC338SC_0402) - 424020..425003 (+) 984 WP_082188557.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24498.66 Da        Isoelectric Point: 10.0363

>NTDB_id=177084 IEC338SC_RS01985 WP_063097825.1 420437..421066(-) (comF) [Acinetobacter pittii strain IEC338SC]
MFNFLNLQPLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQRFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPY
HQEKRRYRRVLIIDDVITTGSSVHSLSQALKQLGCTSIHTACLAATTKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=177084 IEC338SC_RS01985 WP_063097825.1 420437..421066(-) (comF) [Acinetobacter pittii strain IEC338SC]
ATGTTTAATTTTTTAAACCTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATCATTCAGCGGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTTAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATTCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGACGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

82.775

100

0.828
  comF Acinetobacter baumannii D1279779

81.818

100

0.818

Multiple sequence alignment