Detailed information NTG0176922

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BVD85_RS10310
• Genome accession: NZ_CP018908
• Coordinates: 2057388..2058482 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain SS2-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2052388..2063482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVD85_RS10285 (BVD85_10285)	pgsA	2052907..2053446 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BVD85_RS10290 (BVD85_10290)	rodZ	2053456..2054313 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
BVD85_RS10295 (BVD85_10295)	yfmH	2054395..2055678 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BVD85_RS10300 (BVD85_10300)	yfmF	2055675..2056928 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BVD85_RS10305 (BVD85_10305)	yaaA	2057002..2057385 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
BVD85_RS10310 (BVD85_10310)	recF	2057388..2058482 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
BVD85_RS10315 (BVD85_10315)	guaB	2058754..2060235 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
BVD85_RS10320 (BVD85_10320)	trpS	2060467..2061492 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
BVD85_RS10325 (BVD85_10325)	-	2061847..2062719 (+)	873	WP_012028602.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=176922 BVD85_RS10310 WP_012028050.1 2057388..2058482(+) (recF) [Streptococcus suis strain SS2-1]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=176922 BVD85_RS10310 WP_012028050.1 2057388..2058482(+) (recF) [Streptococcus suis strain SS2-1]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442