Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   BVD88_RS08035 Genome accession   NZ_CP018907
Coordinates   1349196..1349795 (-) Length   199 a.a.
NCBI ID   WP_002220676.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344196..1354795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS14395 - 1344471..1344596 (-) 126 Protein_1302 IS5/IS1182 family transposase -
  BVD88_RS07995 (BVD88_08345) dapC 1344684..1345871 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  BVD88_RS08000 (BVD88_08350) dut 1345947..1346399 (-) 453 WP_002220679.1 dUTP diphosphatase -
  BVD88_RS08005 (BVD88_08355) - 1346542..1346970 (+) 429 Protein_1305 AzlC family ABC transporter permease -
  BVD88_RS08030 (BVD88_08380) pilX 1348718..1349191 (-) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BVD88_RS08035 (BVD88_08385) pilK 1349196..1349795 (-) 600 WP_002220676.1 pilus assembly PilX family protein Machinery gene
  BVD88_RS08040 (BVD88_08390) pilJ 1349774..1350712 (-) 939 WP_104916082.1 PilW family protein Machinery gene
  BVD88_RS08045 (BVD88_08395) pilV 1350709..1351329 (-) 621 WP_061725124.1 type IV pilus modification protein PilV Regulator
  BVD88_RS08050 (BVD88_08400) pilH 1351353..1352030 (-) 678 WP_061701871.1 GspH/FimT family pseudopilin Machinery gene
  BVD88_RS08055 (BVD88_08410) dnaB 1352339..1353745 (-) 1407 WP_002213843.1 replicative DNA helicase -
  BVD88_RS08065 (BVD88_08420) - 1353907..1354494 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21932.93 Da        Isoelectric Point: 7.5812

>NTDB_id=176799 BVD88_RS08035 WP_002220676.1 1349196..1349795(-) (pilK) [Neisseria meningitidis strain M21273]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=176799 BVD88_RS08035 WP_002220676.1 1349196..1349795(-) (pilK) [Neisseria meningitidis strain M21273]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.905

Multiple sequence alignment