Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BVD88_RS08050 Genome accession   NZ_CP018907
Coordinates   1351353..1352030 (-) Length   225 a.a.
NCBI ID   WP_061701871.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346353..1357030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS08005 (BVD88_08355) - 1346542..1346970 (+) 429 Protein_1305 AzlC family ABC transporter permease -
  BVD88_RS08030 (BVD88_08380) pilX 1348718..1349191 (-) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BVD88_RS08035 (BVD88_08385) pilK 1349196..1349795 (-) 600 WP_002220676.1 pilus assembly PilX family protein Machinery gene
  BVD88_RS08040 (BVD88_08390) pilJ 1349774..1350712 (-) 939 WP_104916082.1 PilW family protein Machinery gene
  BVD88_RS08045 (BVD88_08395) pilV 1350709..1351329 (-) 621 WP_061725124.1 type IV pilus modification protein PilV Regulator
  BVD88_RS08050 (BVD88_08400) pilH 1351353..1352030 (-) 678 WP_061701871.1 GspH/FimT family pseudopilin Machinery gene
  BVD88_RS08055 (BVD88_08410) dnaB 1352339..1353745 (-) 1407 WP_002213843.1 replicative DNA helicase -
  BVD88_RS08065 (BVD88_08420) - 1353907..1354494 (+) 588 WP_002220670.1 superoxide dismutase -
  BVD88_RS08075 (BVD88_08425) - 1355022..1355531 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BVD88_RS08080 (BVD88_08430) - 1355862..1356194 (-) 333 WP_002213854.1 hypothetical protein -
  BVD88_RS14400 - 1356239..1356346 (-) 108 Protein_1315 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25239.95 Da        Isoelectric Point: 10.2309

>NTDB_id=176802 BVD88_RS08050 WP_061701871.1 1351353..1352030(-) (pilH) [Neisseria meningitidis strain M21273]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=176802 BVD88_RS08050 WP_061701871.1 1351353..1352030(-) (pilH) [Neisseria meningitidis strain M21273]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.722

96

0.813